Re: [galaxy-dev] Displaying tool select list according to user

2017-09-21 Thread SAPET, Frederic
Hi, I have created 3 issues! Use different .loc files depending on user's parameters https://github.com/galaxyproject/galaxy/issues/4666 Access DataLibrary files from tool form https://github.com/galaxyproject/galaxy/issues/4667 File upload enhancement

Re: [galaxy-dev] resubmission on out of memory

2017-09-21 Thread John Chilton
Something like this is possible with some caveats. It is possible to detect memory and walltime errors - but not based on regex in tools but instead by the job runner. So the SLURM runner implements detection of out of memory errors and timeout I think - I don't think most of the other runners do.

Re: [galaxy-dev] Displaying tool select list according to user

2017-09-21 Thread Peter Cock
On Thu, Sep 21, 2017 at 12:50 PM, SAPET, Frederic < frederic.sa...@biogemma.com> wrote: > Hi Peter, > > Good idea, I will keep that in mind for other needs. > I'm not sure that it will be suitable for what I want to do. Users will > have to first import database to their history (yet another step

Re: [galaxy-dev] Displaying tool select list according to user

2017-09-21 Thread Gildas Le Corguillé
As it was already mention, about the filtering we presented at Baltimore this project : https://github.com/abims-sbr/galaxy-blastprivate And about the report, we also have something about that :https://github.com/abims-sbr/galaxy-blastvisu

Re: [galaxy-dev] Displaying tool select list according to user

2017-09-21 Thread SAPET, Frederic
Hi Peter, Good idea, I will keep that in mind for other needs. I'm not sure that it will be suitable for what I want to do. Users will have to first import database to their history (yet another step as they ask me for less, even the upload process is sometimes one step they would like to avoid