Hi Martin,

I will try and figure out where I came across the page (it may have been from 
Google).

I am having trouble installing: BEAM, LPS, PASS, and GPASS. Conda cannot find 
any sources to install these packages.

Thank you!
Tom

From: Martin Čech <mar...@bx.psu.edu>
Sent: Monday, July 16, 2018 12:42 PM
To: Tom Misilo <misi...@fit.edu>
Cc: galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Installing Tool Dependencies

Hello Tom,

that page is very very outdated and I wouldn't trust it. Do you have any 
specific tools from that list that are giving you trouble? If not then I would 
ignore it completely.

Majority of the tools are now installed through the Toolshed and dependencies 
are auto-managed by Galaxy's own Conda which should provide a much better 
experience.

Martin

p.s. from what page did you get to this list?

On Mon, Jul 16, 2018 at 12:06 PM Tom Misilo 
<misi...@fit.edu<mailto:misi...@fit.edu>> wrote:
Hello,

I am trying to help a research here at Florida Tech setup Galaxy locally to 
process their data. However, I am running into a problem installing some tool 
dependencies was on this page 
(https://moin.galaxyproject.org/Admin/Tools/ToolDependencies).

For example, I am trying to install BEAM, LPS, PASS, and GPASS. However, I 
cannot find in the documentation for either the tools themselves or on Galaxy 
on how to set these tools up for use in Galaxy. Would you be able to assist in 
this matter?

Thank you!
Tom

Thomas Misilo
Network Engineer
Florida Institute of Technology
Evans Library
150 W. University Blvd
Melbourne, FL 32901
Phone: 321-674-8831<tel:(321)%20674-8831>
Fax: 321-724-2559<tel:(321)%20724-2559>
misi...@fit.edu<mailto:misi...@fit.edu>

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