Re: [galaxy-dev] Galaxy Bare/Core and custom upload tool

2016-03-31 Thread Stephan Oepen
dear keith, in our work on building the Linguistic Analysis Portal (LAP) at the University of Oslo, we have had to confront the same two issues you mention. our general approach has been to separate LAP-specific code (and specifications) from the Galaxy tree as much as possible. for example, we

[galaxy-dev] per-tool job resource defaults

2016-03-12 Thread Stephan Oepen
dear colleagues, at the university of oslo, we develop a galaxy-based portal for natural language processing (LAP: Language Analysis Portal). jobs are submitted to a compute cluster via DRMAA and SLURM. current development is against the galaxy release of march 2015. i am wondering about