Re: [galaxy-dev] Can't log in to Galaxy instance using Safari web browser
Hi Martin, Thank you for your feedback. We don’t have any javascript errors… Stephanie De : Martin Čech <mar...@bx.psu.edu> Date : mardi 13 septembre 2016 16:36 À : Stephanie Le Gras <sleg...@igbmc.fr>, "galaxy-dev@lists.galaxyproject.org" <galaxy-dev@lists.galaxyproject.org> Objet : Re: [galaxy-dev] Can't log in to Galaxy instance using Safari web browser Hello Stephanie, I have just tested this on 16.07 and on `dev` branch of Galaxy and it works for both in my case. Can you please check the browser's console for javascript errors? Thanks, Martin On Tue, Sep 13, 2016 at 10:22 AM Stephanie LE GRAS <sleg...@igbmc.fr<mailto:sleg...@igbmc.fr>> wrote: Hi there (again), Another problem we are currently facing is that we cannot log in anymore on our galaxy instance using Safari. It’s working with Firefox and Chrome but when we are using Safari (with the right password and login) we just see a green box saying that we successfully logged in and we go back to the log in page. This is a problem we are encountering on our test instance that we’ve just updated to the latest release release_16.07. Any idea about what the problem can be ? Many thanks in advance for any help, Best regards, Stephanie -- Stephanie Le Gras INSERM Computational scientist - Bioinformatician GenomEast platform (former Microarray and Sequencing platform) IGBMC 1, rue Laurent Fries 67404 ILLKIRCH Cedex France Tel. : +33 (0)3 88 65 32 73 ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Can't display tools in the middle panel of Galaxy
Hi there (again again), The last problem we are facing is that sometime when clicking on a tool name in the tool panel, the form don’t get displayed in the middle panel. We’ve checked the log of galaxy and it seems that the HTML request arrives but nothing happens. We have noticed that this seems to occur more ofter when the history is empty and we can correct the phenomenon if we use a non empty url such as : http://use.galaxeast.fr/root?job_id=c72a8935c65f68c1 or if we load an history and click on the [i] (view details) of a dataset. Versions of Galaxy : release_16.04 (production instance), release_16.07 (test instance). Any idea about what the problem can be ? Many thanks in advance for any help, Best regards, Stephanie -- Stephanie Le Gras INSERM Computational scientist - Bioinformatician GenomEast platform (former Microarray and Sequencing platform) IGBMC 1, rue Laurent Fries 67404 ILLKIRCH Cedex France Tel. : +33 (0)3 88 65 32 73 ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Problem downloading HTML datasets
Hi there,
I’m currently facing several problems with the galaxy instance I’m managing.
I’m going to send a mail per problem so sorry in advance : for flooding !
The first problem I’m facing is that we can’t download HTML datasets from
Galaxy. Here is the error I got when I try to do download an HTML dataset :
URL: http://use.galaxeast.fr/datasets/ff16fe18e3db62e7/display?to_ext=html
File
'/data2/galaxy/production/galaxy/.venv/lib/python2.7/site-packages/weberror/evalexception.py',
line 431 in respond
app_iter = self.application(environ, detect_start_response)
File
'/data2/galaxy/production/galaxy/.venv/lib/python2.7/site-packages/paste/recursive.py',
line 85 in __call__
return self.application(environ, start_response)
File
'/data2/galaxy/production/galaxy/.venv/lib/python2.7/site-packages/paste/httpexceptions.py',
line 640 in __call__
return self.application(environ, start_response)
File '/data2/galaxy/production/galaxy/lib/galaxy/web/framework/base.py', line
131 in __call__
return self.handle_request( environ, start_response )
File '/data2/galaxy/production/galaxy/lib/galaxy/web/framework/base.py', line
190 in handle_request
body = method( trans, **kwargs )
File
'/data2/galaxy/production/galaxy/lib/galaxy/webapps/galaxy/controllers/dataset.py',
line 245 in display
return data.datatype.display_data(trans, data, preview, filename, to_ext,
offset=offset, ck_size=ck_size, **kwd)
File '/data2/galaxy/production/galaxy/lib/galaxy/datatypes/data.py', line 353
in display_data
return self._archive_composite_dataset( trans, data, **kwd )
File '/data2/galaxy/production/galaxy/lib/galaxy/datatypes/data.py', line 235
in _archive_composite_dataset
params = util.Params( kwd )
File '/data2/galaxy/production/galaxy/lib/galaxy/util/__init__.py', line 683 in
__init__
self.__dict__[ key ] = sanitize_param( value )
File '/data2/galaxy/production/galaxy/lib/galaxy/util/__init__.py', line 488 in
sanitize_param
raise Exception('Unknown parameter type (%s)' % ( type( value ) ))
Exception: Unknown parameter type ()
We don’t want to disable the sanitize process and we try to add some tools that
generate HTML datasets into the whitelist but it didn’t solve our problem.
Version of Galaxy : release_16.04
Any idea about what the problem can be ?
Many thanks in advance for any help,
Best regards,
Stephanie
--
Stephanie Le Gras
INSERM
Computational scientist - Bioinformatician
GenomEast platform (former Microarray and Sequencing platform)
IGBMC
1, rue Laurent Fries
67404 ILLKIRCH Cedex
France
Tel. : +33 (0)3 88 65 32 73
___
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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[galaxy-dev] Can't log in to Galaxy instance using Safari web browser
Hi there (again), Another problem we are currently facing is that we cannot log in anymore on our galaxy instance using Safari. It’s working with Firefox and Chrome but when we are using Safari (with the right password and login) we just see a green box saying that we successfully logged in and we go back to the log in page. This is a problem we are encountering on our test instance that we’ve just updated to the latest release release_16.07. Any idea about what the problem can be ? Many thanks in advance for any help, Best regards, Stephanie -- Stephanie Le Gras INSERM Computational scientist - Bioinformatician GenomEast platform (former Microarray and Sequencing platform) IGBMC 1, rue Laurent Fries 67404 ILLKIRCH Cedex France Tel. : +33 (0)3 88 65 32 73 ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Problem downloading HTML datasets
Thank you for your feedback ! It seems that we don’t have the problem anymore
with our test instance (16.07)
Steph
De : <arthy...@gmail.com> au nom de Cristel Thomas <cristel.tho...@gmail.com>
Date : mercredi 14 septembre 2016 14:20
À : Stephanie Le Gras <sleg...@igbmc.fr>
Cc : "galaxy-dev@lists.galaxyproject.org" <galaxy-dev@lists.galaxyproject.org>
Objet : Re: [galaxy-dev] Problem downloading HTML datasets
Not that helpful, but we have the same problem with our 16.04 instance.
On Tue, Sep 13, 2016 at 10:21 AM, Stephanie LE GRAS
<sleg...@igbmc.fr<mailto:sleg...@igbmc.fr>> wrote:
Hi there,
I’m currently facing several problems with the galaxy instance I’m managing.
I’m going to send a mail per problem so sorry in advance : for flooding !
The first problem I’m facing is that we can’t download HTML datasets from
Galaxy. Here is the error I got when I try to do download an HTML dataset :
URL: http://use.galaxeast.fr/datasets/ff16fe18e3db62e7/display?to_ext=html
File
'/data2/galaxy/production/galaxy/.venv/lib/python2.7/site-packages/weberror/evalexception.py',
line 431 in respond
app_iter = self.application(environ, detect_start_response)
File
'/data2/galaxy/production/galaxy/.venv/lib/python2.7/site-packages/paste/recursive.py',
line 85 in __call__
return self.application(environ, start_response)
File
'/data2/galaxy/production/galaxy/.venv/lib/python2.7/site-packages/paste/httpexceptions.py',
line 640 in __call__
return self.application(environ, start_response)
File '/data2/galaxy/production/galaxy/lib/galaxy/web/framework/base.py', line
131 in __call__
return self.handle_request( environ, start_response )
File '/data2/galaxy/production/galaxy/lib/galaxy/web/framework/base.py', line
190 in handle_request
body = method( trans, **kwargs )
File
'/data2/galaxy/production/galaxy/lib/galaxy/webapps/galaxy/controllers/dataset.py',
line 245 in display
return data.datatype.display_data(trans, data, preview, filename, to_ext,
offset=offset, ck_size=ck_size, **kwd)
File '/data2/galaxy/production/galaxy/lib/galaxy/datatypes/data.py', line 353
in display_data
return self._archive_composite_dataset( trans, data, **kwd )
File '/data2/galaxy/production/galaxy/lib/galaxy/datatypes/data.py', line 235
in _archive_composite_dataset
params = util.Params( kwd )
File '/data2/galaxy/production/galaxy/lib/galaxy/util/__init__.py', line 683 in
__init__
self.__dict__[ key ] = sanitize_param( value )
File '/data2/galaxy/production/galaxy/lib/galaxy/util/__init__.py', line 488 in
sanitize_param
raise Exception('Unknown parameter type (%s)' % ( type( value ) ))
Exception: Unknown parameter type ()
We don’t want to disable the sanitize process and we try to add some tools that
generate HTML datasets into the whitelist but it didn’t solve our problem.
Version of Galaxy : release_16.04
Any idea about what the problem can be ?
Many thanks in advance for any help,
Best regards,
Stephanie
--
Stephanie Le Gras
INSERM
Computational scientist - Bioinformatician
GenomEast platform (former Microarray and Sequencing platform)
IGBMC
1, rue Laurent Fries
67404 ILLKIRCH Cedex
France
Tel. : +33 (0)3 88 65 32 73<tel:%2B33%20%280%293%2088%2065%2032%2073>
___
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
___
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Can't log in to Galaxy instance using Safari web browser
Dear Martin, It’s worked for both. I’ve just tried to log in using Safari private window and it didn’t work neither… Steph De : Martin Čech <mar...@bx.psu.edu> Date : mardi 13 septembre 2016 17:43 À : Stephanie Le Gras <sleg...@igbmc.fr>, "galaxy-dev@lists.galaxyproject.org" <galaxy-dev@lists.galaxyproject.org> Objet : Re: [galaxy-dev] Can't log in to Galaxy instance using Safari web browser Stephanie: can you log in to usegalaxy.org<http://usegalaxy.org> or test.galaxyproject.org<http://test.galaxyproject.org> using Safari? Also please try to login to your instance using Safari private window. Martin On Tue, Sep 13, 2016 at 11:33 AM Stephanie LE GRAS <sleg...@igbmc.fr<mailto:sleg...@igbmc.fr>> wrote: Hi Martin, Thank you for your feedback. We don’t have any javascript errors… Stephanie De : Martin Čech <mar...@bx.psu.edu<mailto:mar...@bx.psu.edu>> Date : mardi 13 septembre 2016 16:36 À : Stephanie Le Gras <sleg...@igbmc.fr<mailto:sleg...@igbmc.fr>>, "galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>" <galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>> Objet : Re: [galaxy-dev] Can't log in to Galaxy instance using Safari web browser Hello Stephanie, I have just tested this on 16.07 and on `dev` branch of Galaxy and it works for both in my case. Can you please check the browser's console for javascript errors? Thanks, Martin On Tue, Sep 13, 2016 at 10:22 AM Stephanie LE GRAS <sleg...@igbmc.fr<mailto:sleg...@igbmc.fr>> wrote: Hi there (again), Another problem we are currently facing is that we cannot log in anymore on our galaxy instance using Safari. It’s working with Firefox and Chrome but when we are using Safari (with the right password and login) we just see a green box saying that we successfully logged in and we go back to the log in page. This is a problem we are encountering on our test instance that we’ve just updated to the latest release release_16.07. Any idea about what the problem can be ? Many thanks in advance for any help, Best regards, Stephanie -- Stephanie Le Gras INSERM Computational scientist - Bioinformatician GenomEast platform (former Microarray and Sequencing platform) IGBMC 1, rue Laurent Fries 67404 ILLKIRCH Cedex France Tel. : +33 (0)3 88 65 32 73 ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
