Hello together,
not being an easy task to set up galaxy on a HPC cluster, satisfying user
and the IT department needs,
I would like to share our configuration (based on 15.07) to make it easier
for others to dive into this.
All configuration files and an installation manual is available at:
Hi Simon,
we use slurm via drmaa. Find configurations here:
https://github.com/mpg-age-bioinformatics/galaxy-admin/tree/master/server/config
https://github.com/mpg-age-bioinformatics/galaxy-admin/tree/master/system
Best,
Sven
> On 15 Oct 2015, at 08:38, Björn Grüning
ease allow me to suggest that you copy or link your documents to the
> 'Galaxy Community Log Board':
>
> https://wiki.galaxyproject.org/Community/Logs
>
>
> This makes sharing and especially finding your documents much easier
>
> Regards, Hans-Rudolf
>
>
>
>
&
Hello list,
installing the dependency package_picard_1_136 results in the following
error:
---
File
"/beegfs/common/galaxy/home/galaxy-15.07/lib/tool_shed/galaxy_install/install_manager.py",
line 142, in install_and_build_package_via_fabric
tool_dependency =
Hi Leslie,
I face the same problem:
---
Downloading
http://pypi.python.org/packages/source/d/distribute/distribute-0.6.38.tar.gz
Extracting in /tmp/tmplcqzT1
Now working in /tmp/tmplcqzT1/distribute-0.6.38
Building a Distribute egg in
pyparsing-2.0.3.dist-info
scipy-0.15.1-py2.7.egg-info
---
I guess setuptools (v 18.3.1) is the cause of the incompatibility with the
distribute package that galaxy_sequencing_utils downloads.
Hope this helps!
Best,
Sven.
On 15 September 2015 at 10:20, Sven E. Templer <sven.temp...@gmail.
Hi Carlos,
next steps might include:
* install slurm drmaa
http://apps.man.poznan.pl/trac/slurm-drmaa
e.g.
curl -#o slurm-drmaa-1.0.7.tar.gz
http://apps.man.poznan.pl/trac/slurm-drmaa/downloads/9
tar -xf slurm-drmaa-1.0.7.tar.gz
cd slurm-drmaa-1.0.7
p=$(which srun)
