Dear all,
I am trying to tag datasets with hashtags (so they propagate) with tags like
#key:value . The idea is to transport information through the workflow that is
used at the end of the WF by a custom tool to rename and organise datasets
depending on their tags
I can do this in the GUI: I
kdupes to dedupe (it
> being a fork of picard)?
>
> Previously, I've been using fgbio, but this involved aligning the data in
> Galaxy, exporting it and annotating with UMI's and then loading back in.
> Ideally, we'd like to keep the entire workflow within Galaxy (hence the
> original
ease double check how the read names look in your bam file.
Best
Charles
>
> Thanks
> From: Charles Girardot <charles.girar...@embl.de>
> Sent: 26 March 2018 12:05:22
> To: Brooks, Tony
> Cc: galaxy-dev@lists.galaxyproject.org
> Subject: Re: [galaxy-dev] Best practices
___
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> https://lists.galaxyproject.org/
>
> To search Galaxy mai
input}
and #{input_bams_0.bam} without success.
Does anyone has an idea what the correct spelling is for Freebayes ? I am sorry
Jelle (our galaxy admin) is away this week so I can’t tell you our server
version but it is ~2 years old.
Thanks
Charles
=
Charles Girardot
Hi all,
I work with Jelle and want to add on the issue.
Help would be *greatly* appreciated as this is a *major* stopper on our
production server right now.
In the database ‘workflow_invocation' table, one can see a ’state’ column with
values like ’scheduled’ or ‘failed’.
Before december
