[galaxy-dev] Aberrant data allocation and SNP mapping problem

2015-12-01 Thread Felix Mayr
Dear Galaxy dev,

I have two problems, which might be related to each other. 

1) For a long time already, I continuously have ‘left over’ data allocation 
after deleting and purging histories. Someone from your team has repeatedly 
resolved that problem, but it root of the problem still persists. I know have 
91% allocation, when only having two histories of 67.48 and 59.45 GB.  The fix 
for automatic recalculation doesn’t seem to work…? 

2) I recently performed SNP mapping using a CloudMap based pipeline. The 
problem: the SNP mapping plots shows the exact same mapping/plots of the SNPs. 
They can not be the same. What is not the problem: the input files, as they are 
different in size, first and last lines of the files, and they produce very 
different SNP mapping mutation tables. Therefore, I think there might be a 
problem that the workflow somehow uses the same intermediate file for 
generating the SNP mapping plots. I already re-uploaded and rerun the workflows 
in new histories multiple times, but the same result each time. I would upload 
and run another data set for which I already have SNP mapping plots to see 
whether I again get the same plots or not, but that is now not possible as I am 
close to the data quota. 

I hope you can help solve these problems. 

All best,

Felix



˜
Felix Mayr, MSc.
Max Planck Institute for Biology of Ageing
Research Group of Dr. Martin Denzel
Metabolic and Genetic Regulation of Ageing
Joseph-Stelzmann-Str. 9b
D-50931 Cologne
Germany
+49.221.3797.0465
www.age.mpg.de/science/research-labs/denzel/

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Re: [galaxy-dev] Aberrant data allocation and SNP mapping problem

2015-12-01 Thread Felix Mayr
The login emailaddress I use is felix.m...@gmail.com 
<mailto:felix.m...@gmail.com>.


˜
Felix Mayr, MSc.
Max Planck Institute for Biology of Ageing
Research Group of Dr. Martin Denzel
Metabolic and Genetic Regulation of Ageing
Joseph-Stelzmann-Str. 9b
D-50931 Cologne
Germany
+49.221.3797.0465
www.age.mpg.de/science/research-labs/denzel/

> On 01 Jan 2015, at 09:44, Felix Mayr <fm...@age.mpg.de> wrote:
> 
> Dear Galaxy dev,
> 
> I have two problems, which might be related to each other. 
> 
> 1) For a long time already, I continuously have ‘left over’ data allocation 
> after deleting and purging histories. Someone from your team has repeatedly 
> resolved that problem, but it root of the problem still persists. I know have 
> 91% allocation, when only having two histories of 67.48 and 59.45 GB.  The 
> fix for automatic recalculation doesn’t seem to work…? 
> 
> 2) I recently performed SNP mapping using a CloudMap based pipeline. The 
> problem: the SNP mapping plots shows the exact same mapping/plots of the 
> SNPs. They can not be the same. What is not the problem: the input files, as 
> they are different in size, first and last lines of the files, and they 
> produce very different SNP mapping mutation tables. Therefore, I think there 
> might be a problem that the workflow somehow uses the same intermediate file 
> for generating the SNP mapping plots. I already re-uploaded and rerun the 
> workflows in new histories multiple times, but the same result each time. I 
> would upload and run another data set for which I already have SNP mapping 
> plots to see whether I again get the same plots or not, but that is now not 
> possible as I am close to the data quota. 
> 
> I hope you can help solve these problems. 
> 
> All best,
> 
> Felix
> 
> 
> 
> ˜
> Felix Mayr, MSc.
> Max Planck Institute for Biology of Ageing
> Research Group of Dr. Martin Denzel
> Metabolic and Genetic Regulation of Ageing
> Joseph-Stelzmann-Str. 9b
> D-50931 Cologne
> Germany
> +49.221.3797.0465
> www.age.mpg.de/science/research-labs/denzel/ 
> <http://www.age.mpg.de/science/research-labs/denzel/>

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