Re: [galaxy-dev] functional tests / database lock

2015-06-16 Thread Ryan G
I am using postgres in production but want to validate my staging instance before pushing it into production. I do this with the functional tests. I guess I'll have to set up a postgres database for the staging instance as well. On Mon, Jun 15, 2015 at 10:32 AM, John Chilton

Re: [galaxy-dev] functional tests / database lock

2015-06-15 Thread John Chilton
Not exactly - I feel like sqlite should be able to do the kinds of things Galaxy does without this occurring - it should just be inefficient. We are probably doing something across multiple threads that we should not be - presumably related to job handling. After a recent sqlalchemy upgrade -

Re: [galaxy-dev] functional tests / database lock

2015-06-12 Thread Nicola Soranzo
Hi Ryan, there is no know fix for this, apart from moving to PostgreSQL. Cheers, Nicola Il 12.06.2015 16:43 Ryan G ha scritto: Hi all - I'm running functional tests on a set of tools using 'run_tests.sh -sid ...'. A few of the tests fail. When I go back and run the tool tests individually,