Re: [galaxy-dev] Ballgown does not work

Hi Jochen, Theo also opened a pull request to submit it to IUC: https://github.com/galaxyproject/tools-iuc/pull/1366 but hasn't updated it after August 2017. Cheers, Nicola On 10/04/18 14:37, Jochen Bick wrote: Hej Peter, thanks for the quick reply. My galaxy is a release_17.05 I think the

Re: [galaxy-dev] Ballgown does not work

On Tue, Apr 10, 2018 at 3:28 PM, Jochen Bick wrote: > Hi Peter, > > >> >> https://github.com/CollardT/Ballgown-Wrapper > > I can contact report the issue on github. I think that would be best. > It looks like its looking for > a variable called dataset with is not

Re: [galaxy-dev] Ballgown does not work

Hi Peter, > "The short answer is that as of 17.01, Galaxy should install Conda > the first time it starts up and be configured to use it by default." yes, it installs everything with conda. So that should work, but I could also set it up my self manually. > You didn't confirm which Ballgown

Re: [galaxy-dev] Ballgown does not work

Hi Jochen, If you are using release_17.05, that should be using (bio)conda for dependencies: https://docs.galaxyproject.org/en/latest/admin/conda_faq.html "The short answer is that as of 17.01, Galaxy should install Conda the first time it starts up and be configured to use it by default." The

Re: [galaxy-dev] Ballgown does not work

Hej Peter, thanks for the quick reply. My galaxy is a release_17.05 I think the xml is also broken. Cheers Jochen On 10.04.2018 15:28, Peter Cock wrote: > Are you trying to install this? > > https://toolshed.g2.bx.psu.edu/view/theo.collard/ballgown_wrapper/05977e96375b > > If so, it does set

Re: [galaxy-dev] Ballgown does not work

Are you trying to install this? https://toolshed.g2.bx.psu.edu/view/theo.collard/ballgown_wrapper/05977e96375b If so, it does set out its requirements: bioconductor-ballgown r-dplyr r-optparse However, your Galaxy would have to be using BioConda to do this.

[galaxy-dev] Ballgown does not work

Hi, I'm trying to install Ballgown but it throws some error message after running it: cannot find 'dataset' while searching for 'param_name.dataset.dataset' the script does not have test-data file and it also does not install the requirements. Cheers Jochen