@cshl.edu>>
Date: Monday, February 27, 2017 at 12:26 PM
To:
"galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>"
mailto:galaxy-dev@lists.galaxyproject.org>>
Subject: [galaxy-dev] Galaxy and Torque
Hi all,
Is Torque still supported as a
Hi all,
Is Torque still supported as a resource manager?
This page ( https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster )
mentioned the usage of Torque and how to set it up. However, the setup
instructions refer to a /script/scramble.py file which I assume interfaces with
eggs. If
sincere apologies.
Cordialement / Regards,
Edgar Fernandez
De : Fernandez Edgar
Envoyé : January-22-15 12:35 PM
À : 'Nate Coraor'
Cc : John Chilton; galaxy-...@bx.psu.edu
Objet : RE: [galaxy-dev] galaxy and torque - resource allocation
Hello Nate,
I just tried the modal upload dialog and it
z Edgar
Cc : John Chilton; galaxy-...@bx.psu.edu
Objet : Re: [galaxy-dev] galaxy and torque - resource allocation
Hi Edgar,
Please make sure you have disabled the developer options `use_interactive` and
`debug` in galaxy.ini, then restart your Galaxy server and try the upload again.
Also, plea
cko)
> Chrome/40.0.2214.91 Safari/537.36"
>
> ip_addr - - [22/Jan/2015:10:18:04 -0400] "GET
> /galaxy-prod/api/histories/5a0831c911c29227/contents HTTP/1.1" 200 - "
> http://esiservera.esi.umontreal.ca:8081/galaxy-prod/root"; "Mozilla/5.0
> (X11; L
eWebKit/537.36 (KHTML, like Gecko) Chrome/40.0.2214.91
Safari/537.36"
ip_addr - - [22/Jan/2015:10:18:29 -0400] "GET
/galaxy-prod/api/histories/5a0831c911c29227/contents HTTP/1.1" 200 -
"http://esiservera.esi.umontreal.ca:8081/galaxy-prod/root"; "Mozilla/5.0 (X11;
dez
>
>
> -Message d'origine-----
> De : John Chilton [mailto:jmchil...@gmail.com]
> Envoyé : January-21-15 9:34 PM
> À : Fernandez Edgar
> Cc : galaxy-...@bx.psu.edu
> Objet : Re: [galaxy-dev] galaxy and torque - resource allocation
>
> Was hoping someone with an actu
--
De : John Chilton [mailto:jmchil...@gmail.com]
Envoyé : January-21-15 9:34 PM
À : Fernandez Edgar
Cc : galaxy-...@bx.psu.edu
Objet : Re: [galaxy-dev] galaxy and torque - resource allocation
Was hoping someone with an actual torque cluster would respond. I think the way
you would configure this might be f
oyé : January-18-15 8:59 PM
> À : Fernandez Edgar
> Cc : galaxy-...@bx.psu.edu
> Objet : Re: [galaxy-dev] galaxy and torque - resource allocation
>
> Galaxy generally defers to the DRM (torque in your case) for dealing with
> these things. In your job_conf.xml you can specify limits
r Fernandez
-Message d'origine-
De : John Chilton [mailto:jmchil...@gmail.com]
Envoyé : January-18-15 8:59 PM
À : Fernandez Edgar
Cc : galaxy-...@bx.psu.edu
Objet : Re: [galaxy-dev] galaxy and torque - resource allocation
Galaxy generally defers to the DRM (torque in your case) for dealing wi
Galaxy generally defers to the DRM (torque in your case) for dealing
with these things. In your job_conf.xml you can specify limits for
memory or CPUs and Galaxy will pass these along to the DRM at which
point it is up to the DRM to enforce these - details depend on if you
are using the PBS runner
Hello gents,
Hope everyone had a great holiday break!
Wish you guys all the best for 2015!
I have a couple of questions about how resources (CPU and memory) is allocated
when you have a galaxy and torque installation.
So I've setup torque with some default and maximum amount of CPU and memory
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