Re: [galaxy-dev] Reporting issues for the wiki? e.g. universe_wgsi.ini still widely used

2016-11-15 Thread Dannon Baker 
Unfortunately we weren't able to use pandoc, coming from Moin.

Regarding edit links, yes, that's exactly what we have implemented.

-Dannon

On Tue, Nov 15, 2016 at 10:26 AM, Peter Cock 
wrote:

> Thanks Dannon,
>
> I've logged the universe_wsgi.ini issue there as
> https://github.com/galaxyproject/galaxy-site/issues/16
>
> Interesting to see yet another MediaWiki site being moved to
> GitHub with Markdown - although not with GitHub pages in this
> case. I'd guess you guys used the wonderful pandoc for the
> conversion?
>
> I assume you'll be able to add "edit" buttons to pages pointing
> at the markdown pages on GitHub? While it could be prettier,
> this works pretty well for us using GitHub Pages:
>
> https://github.com/biopython/biopython.github.io/pull/78
>
> Regards,
>
> Peter
>
> On Tue, Nov 15, 2016 at 3:10 PM, Dannon Baker 
> wrote:
> > Hi Peter,
> >
> > We're in the middle of migrating the wiki right now -- you may notice
> that
> > the current wiki is in read-only mode.  Going forward, the place to
> report
> > (and fix) issues like that will be
> > https://github.com/galaxyproject/galaxy-site.
> >
> > -Dannon
> >
> > On Tue, Nov 15, 2016 at 10:06 AM, Peter Cock 
> > wrote:
> >>
> >> Hello all,
> >>
> >> Is there a specific issue tracker for the wiki? It seems wrong to
> >> open an issue on the main GitHub code repository...
> >>
> >> e.g. Many of the documentation pages still refer to the legacy
> >> configuration filename universe_wgsi.ini rather than the new
> >> name of config/galaxy.ini
> >>
> >> Problem pages include:
> >>
> >> https://wiki.galaxyproject.org/Learn/SecurityFeatures
> >> https://wiki.galaxyproject.org/Admin/DiskQuotas
> >> https://wiki.galaxyproject.org/Admin/SampleTracking/Demo
> >> https://wiki.galaxyproject.org/Admin/Tools/MultipleOutputFiles
> >> https://wiki.galaxyproject.org/Admin/Config/GenomeSpace
> >> https://wiki.galaxyproject.org/Admin/Config/ApacheExternalUserAuth
> >> https://wiki.galaxyproject.org/VisualizationSetup
> >> https://wiki.galaxyproject.org/ToolShedApi
> >>
> >> Other pages would benefit from minor edits to at least put the old form
> >> second and in brackets:
> >>
> >> https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster
> >> https://wiki.galaxyproject.org/Admin/Interface
> >> https://wiki.galaxyproject.org/ToolShed/InstallingRepositoriesToGalaxy
> >> Some pages look fine, e.g.
> >>
> >> https://wiki.galaxyproject.org/ToolShed/InstallingAndCompilingPackages
> >>
> >> Or are clearly dated and appropriate for the time, e.g. Dev news briefs
> >>
> >> https://wiki.galaxyproject.org/DevNewsBriefs/2010_07_16
> >>
> >> This means lots of pages with the term which are fine:
> >>
> >>
> >> https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax?action=
> fullsearch=0=0=universe_wsgi.ini
> >>
> >> Regards,
> >>
> >> Peter
> >> ___
> >> Please keep all replies on the list by using "reply all"
> >> in your mail client.  To manage your subscriptions to this
> >> and other Galaxy lists, please use the interface at:
> >>   https://lists.galaxyproject.org/
> >>
> >> To search Galaxy mailing lists use the unified search at:
> >>   http://galaxyproject.org/search/mailinglists/
> >
> >
>
___
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Re: [galaxy-dev] Reporting issues for the wiki? e.g. universe_wgsi.ini still widely used

2016-11-15 Thread Peter Cock 
Thanks Dannon,

I've logged the universe_wsgi.ini issue there as
https://github.com/galaxyproject/galaxy-site/issues/16

Interesting to see yet another MediaWiki site being moved to
GitHub with Markdown - although not with GitHub pages in this
case. I'd guess you guys used the wonderful pandoc for the
conversion?

I assume you'll be able to add "edit" buttons to pages pointing
at the markdown pages on GitHub? While it could be prettier,
this works pretty well for us using GitHub Pages:

https://github.com/biopython/biopython.github.io/pull/78

Regards,

Peter

On Tue, Nov 15, 2016 at 3:10 PM, Dannon Baker  wrote:
> Hi Peter,
>
> We're in the middle of migrating the wiki right now -- you may notice that
> the current wiki is in read-only mode.  Going forward, the place to report
> (and fix) issues like that will be
> https://github.com/galaxyproject/galaxy-site.
>
> -Dannon
>
> On Tue, Nov 15, 2016 at 10:06 AM, Peter Cock 
> wrote:
>>
>> Hello all,
>>
>> Is there a specific issue tracker for the wiki? It seems wrong to
>> open an issue on the main GitHub code repository...
>>
>> e.g. Many of the documentation pages still refer to the legacy
>> configuration filename universe_wgsi.ini rather than the new
>> name of config/galaxy.ini
>>
>> Problem pages include:
>>
>> https://wiki.galaxyproject.org/Learn/SecurityFeatures
>> https://wiki.galaxyproject.org/Admin/DiskQuotas
>> https://wiki.galaxyproject.org/Admin/SampleTracking/Demo
>> https://wiki.galaxyproject.org/Admin/Tools/MultipleOutputFiles
>> https://wiki.galaxyproject.org/Admin/Config/GenomeSpace
>> https://wiki.galaxyproject.org/Admin/Config/ApacheExternalUserAuth
>> https://wiki.galaxyproject.org/VisualizationSetup
>> https://wiki.galaxyproject.org/ToolShedApi
>>
>> Other pages would benefit from minor edits to at least put the old form
>> second and in brackets:
>>
>> https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster
>> https://wiki.galaxyproject.org/Admin/Interface
>> https://wiki.galaxyproject.org/ToolShed/InstallingRepositoriesToGalaxy
>> Some pages look fine, e.g.
>>
>> https://wiki.galaxyproject.org/ToolShed/InstallingAndCompilingPackages
>>
>> Or are clearly dated and appropriate for the time, e.g. Dev news briefs
>>
>> https://wiki.galaxyproject.org/DevNewsBriefs/2010_07_16
>>
>> This means lots of pages with the term which are fine:
>>
>>
>> https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax?action=fullsearch=0=0=universe_wsgi.ini
>>
>> Regards,
>>
>> Peter
>> ___
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>   https://lists.galaxyproject.org/
>>
>> To search Galaxy mailing lists use the unified search at:
>>   http://galaxyproject.org/search/mailinglists/
>
>
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
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Re: [galaxy-dev] Reporting issues for the wiki? e.g. universe_wgsi.ini still widely used

2016-11-15 Thread Dannon Baker 
Hi Peter,

We're in the middle of migrating the wiki right now -- you may notice that
the current wiki is in read-only mode.  Going forward, the place to report
(and fix) issues like that will be
https://github.com/galaxyproject/galaxy-site.

-Dannon

On Tue, Nov 15, 2016 at 10:06 AM, Peter Cock 
wrote:

> Hello all,
>
> Is there a specific issue tracker for the wiki? It seems wrong to
> open an issue on the main GitHub code repository...
>
> e.g. Many of the documentation pages still refer to the legacy
> configuration filename universe_wgsi.ini rather than the new
> name of config/galaxy.ini
>
> Problem pages include:
>
> https://wiki.galaxyproject.org/Learn/SecurityFeatures
> https://wiki.galaxyproject.org/Admin/DiskQuotas
> https://wiki.galaxyproject.org/Admin/SampleTracking/Demo
> https://wiki.galaxyproject.org/Admin/Tools/MultipleOutputFiles
> https://wiki.galaxyproject.org/Admin/Config/GenomeSpace
> https://wiki.galaxyproject.org/Admin/Config/ApacheExternalUserAuth
> https://wiki.galaxyproject.org/VisualizationSetup
> https://wiki.galaxyproject.org/ToolShedApi
>
> Other pages would benefit from minor edits to at least put the old form
> second and in brackets:
>
> https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster
> https://wiki.galaxyproject.org/Admin/Interface
> https://wiki.galaxyproject.org/ToolShed/InstallingRepositoriesToGalaxy
> Some pages look fine, e.g.
>
> https://wiki.galaxyproject.org/ToolShed/InstallingAndCompilingPackages
>
> Or are clearly dated and appropriate for the time, e.g. Dev news briefs
>
> https://wiki.galaxyproject.org/DevNewsBriefs/2010_07_16
>
> This means lots of pages with the term which are fine:
>
> https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax?action=
> fullsearch=0=0=universe_wsgi.ini
>
> Regards,
>
> Peter
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

[galaxy-dev] Reporting issues for the wiki? e.g. universe_wgsi.ini still widely used

2016-11-15 Thread Peter Cock 
Hello all,

Is there a specific issue tracker for the wiki? It seems wrong to
open an issue on the main GitHub code repository...

e.g. Many of the documentation pages still refer to the legacy
configuration filename universe_wgsi.ini rather than the new
name of config/galaxy.ini

Problem pages include:

https://wiki.galaxyproject.org/Learn/SecurityFeatures
https://wiki.galaxyproject.org/Admin/DiskQuotas
https://wiki.galaxyproject.org/Admin/SampleTracking/Demo
https://wiki.galaxyproject.org/Admin/Tools/MultipleOutputFiles
https://wiki.galaxyproject.org/Admin/Config/GenomeSpace
https://wiki.galaxyproject.org/Admin/Config/ApacheExternalUserAuth
https://wiki.galaxyproject.org/VisualizationSetup
https://wiki.galaxyproject.org/ToolShedApi

Other pages would benefit from minor edits to at least put the old form
second and in brackets:

https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster
https://wiki.galaxyproject.org/Admin/Interface
https://wiki.galaxyproject.org/ToolShed/InstallingRepositoriesToGalaxy
Some pages look fine, e.g.

https://wiki.galaxyproject.org/ToolShed/InstallingAndCompilingPackages

Or are clearly dated and appropriate for the time, e.g. Dev news briefs

https://wiki.galaxyproject.org/DevNewsBriefs/2010_07_16

This means lots of pages with the term which are fine:

https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax?action=fullsearch=0=0=universe_wsgi.ini

Regards,

Peter
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/