Re: [galaxy-dev] Unable to run simple Docker tool

2015-08-29 Thread Mikel Egaña Aranguren
Hi; The problem is definitively Galaxy related, and the cause seems to be that my program, when invoked in the Docker image from Galaxy, it's unable to resolve the service host. The weird thing is that it can resolve it when invoked within Docker, so there must be a problem with how Galaxy

Re: [galaxy-dev] Unable to run simple Docker tool

2015-08-28 Thread Mikel Egaña Aranguren
Hi again; I can execute Docker tools from Galaxy (thanks!), however now I have a further problem that must be Galaxy-related and I can't debug straight away. My Galaxy tool is a simple java jar that gets a service URL and an RDF file as inputs [1], invokes the service by POSTing the RDF to the

Re: [galaxy-dev] Unable to run simple Docker tool

2015-08-19 Thread Mikel Egaña Aranguren
2015-08-19 15:50 GMT+02:00 John Chilton jmchil...@gmail.com: I don't know to be honest - a couple of things to verify. I wrote a bunch of debug stuff right away at the end of the e-mail and you can try if I am wrong, but after I wrote I realized the problem. You are not using sudo for

[galaxy-dev] Unable to run simple Docker tool

2015-08-18 Thread Mikel Egaña Aranguren
Hi; I'm trying to develop a Docker based tool, as suggested by a peer-reviewer who might be reading this :P However, I'm having trouble with even the most basic setting, and I don't know what might be wrong, so any help will be much appreciated. I have developed a very simple docker image and