What Bjoern said - unless you meant the older bowtie1 wrappers. Those
have not been updated - I think we decision was made at Penn State to
focus on bowtie2 - but if people are still interested in enhancing the
bowtie1 wrappers I think a PR would be welcome. There have been some
other relatively re
Hi Ryan,
latest wrappers are here:
https://github.com/galaxyproject/tools-devteam/tree/master/tools/bowtie2
And a PR would be great!
But as far as I can see this is already implemented and you can choose
as option `Paired-end Dataset Collection`, isn't it?
Ciao,
Bjoern
On 24.06.2015 20:02,
Hi all - It looks like bowtie's wrapper is working incorrectly for a list
of dataset pairs. Its expecting all the forward reads in one dataset list
and the reverse reads in a separate dataset list.
Instead, I have a list of dataset pairs (for paired-end data). This cannot
be provided to bowtie a
