Re: [galaxy-dev] docker-galaxy-stable tools fail

2015-06-13 Thread Björn Grüning
Hi Evan, this is great! Have fun with Docker and Galaxy, Bjoern > Ok, thanks for the help Björn. > > I finally got this built by doing two things: > > 1) I upgraded boot2docker and docker to 1.6.2, then deleted my > existing boot2docker image and reinitialized (i.e, stop delete > download ini

Re: [galaxy-dev] docker-galaxy-stable tools fail

2015-06-13 Thread Evan Bollig PhD
Ok, thanks for the help Björn. I finally got this built by doing two things: 1) I upgraded boot2docker and docker to 1.6.2, then deleted my existing boot2docker image and reinitialized (i.e, stop delete download init up). 2) Also added this line to the top of the Dockerfile (to enable testtools

Re: [galaxy-dev] docker-galaxy-stable tools fail

2015-06-13 Thread Björn Grüning
Hi Evan, can you install other tools, or is this happening to all tools? Which version are you running? Thanks for reporting! Bjoern Am 13.06.2015 um 10:59 schrieb Evan Bollig PhD: > Not sure why, but these tools fail to install inside the > docker-galaxy-stable Dockerfile build: > > indel_real

[galaxy-dev] docker-galaxy-stable tools fail

2015-06-13 Thread Evan Bollig PhD
Not sure why, but these tools fail to install inside the docker-galaxy-stable Dockerfile build: indel_realigner unified_genotyper variant_select package_bedtools_2_19 bedtools I'm getting errors like these when executing "RUN install-repository": [] Galaxy is running. Processing