[galaxy-dev] gatk tool config file

2015-03-02 Thread Roberto Alonso CIPF
Hello, I would like to add a very simple GATK wrapper to galaxy, but I am facing one problem. When you want to use UnifiedGenotyper tool, the extension of the bam file must be .bam, and when you upload something to galaxy it changes its extension,is there any way to change this extension? or is it

Re: [galaxy-dev] gatk tool config file

2015-03-02 Thread Peter Cock
On Mon, Mar 2, 2015 at 4:08 PM, Roberto Alonso CIPF wrote: > Hello, > > I would like to add a very simple GATK wrapper to galaxy, but I am facing > one problem. When you want to use UnifiedGenotyper tool, the extension of > the bam file must be .bam, and when you upload something to galaxy it > ch