Re: [galaxy-dev] git clone 16.10 bwa 0.7.15 data manager

2017-04-10 Thread Peter Cock
Hi Bryan, I suspect the missing dependency BWA may reflect the switch away from Galaxy's home-grown packaging system to using Conda - enabled by default since v17.01, https://docs.galaxyproject.org/en/master/admin/conda_faq.html Newer dependencies will likely next get an old fashioned package

[galaxy-dev] git clone 16.10 bwa 0.7.15 data manager

2017-04-10 Thread Bryan Hepworth
Hi All I've been trying to get a local galaxy running with an assortment of tools for a local researcher. I'm a linux administrator rather than a bioinformatics researcher and am familiar with how repo's work for RedHat, R and the like. I've built tools for other groups at work and from my