Re: [galaxy-dev] Tool Shed Workflow

2012-06-09 Thread Ross
John, Why not separate toolshed updates from dist updates - tool xml and other code should be robust wrt dist version. One thing at a time - tools get updated less often than dist I'd wager, and you can subscribe to repository update emails. After a dist update you want all the tool functional

Re: [galaxy-dev] Tool Shed Workflow

2012-06-09 Thread Greg Von Kuster
Hi John, I feel this is an important topic and that others in the community are undoubtedly benefitting from it, so I'm glad you started this discussion. On Jun 9, 2012, at 12:36 AM, John Chilton wrote: We don't pull down from bitbucket directly to our production environment, we pull

[galaxy-dev] RNA-seq wig file from UCSC conversion to gene expression values, using Galaxy

2012-06-09 Thread Karmella Haynes
Hello Galaxy list, I'm helping a student with a human bioinformatics project. We would like to generate a single relative gene expression value for each gene in the human genome (for different cell lines of interest) using the RNA-seq data from the UCSC archive. We can see raw signal values by