[galaxy-dev] genetrack behind https

2011-01-03 Thread Ry4an Brase
installations as can the UCSC visualizer and I'm running afoul of my redirect and/or https setup, or should I have figured out that I need my own genetrack server from https://bitbucket.org/galaxy/galaxy-central/wiki/ExternalDisplayApplications/Tutorial ? Thanks, -- Ry4an Brase

[galaxy-dev] Configuring remote galaxy job runners

2011-02-23 Thread Ry4an Brase
it in the Cluster config but I added the galaxyroot/lib to the $PYTHONPATH just in case, but no luck. Is it possible it's just the output on STDERR causing the job to fail, and if so how do I shut that up when I'm running through qsub (so redirect to /dev/null isn't quite right)? Thanks, -- Ry4an Brase

Re: [galaxy-dev] Configuring remote galaxy job runners

2011-02-24 Thread Ry4an Brase
, you commented on it 8 months ago ;) https://bitbucket.org/galaxy/galaxy-central/issue/325/allow-tool-authors-to-decide-whether-to Heh, not just commented but had the call to do a 'take' on it, though the good folks who have done more with it since have taken it back. Thanks! -- Ry4an

Re: [galaxy-dev] upload large data file

2011-03-04 Thread Ry4an Brase
FTP functionality ( https://bitbucket.org/galaxy/galaxy-central/wiki/UploadViaFTP ). -- Ry4an Brase 612-626-6575 Software Developer Application Development University of Minnesota Supercomputing Institutehttp

Re: [galaxy-dev] divide fq into 2

2011-03-08 Thread Ry4an Brase
dataset into two datasets each half the size. If instead you mean on the Unix command line, use the tool 'split' or 'head' and 'tail'. -- Ry4an Brase 612-626-6575 Software Developer Application Development University

Re: [galaxy-dev] divide fq into 2

2011-03-09 Thread Ry4an Brase
/galaxy-central/wiki/DataLibraries/UploadingFiles _not_ the 'Get Data' - 'Upload File' selection from the 'Tools' menu? People work with files _much_ larger than that in Galaxy all the time. Musa From: Ry4an Brase [ry4an+gal...@msi.umn.edu] Sent

[galaxy-dev] Galaxy job runner queue management questions

2011-03-10 Thread Ry4an Brase
management stuff on the torque side of things to balance capacity across tools, users, expected processing time, etc. How are other sites handling this? -- Ry4an Brase 612-626-6575 Software Developer Application Development

[galaxy-dev] NoneType dereference on the jobs view

2011-03-10 Thread Ry4an Brase
here too in case either others are seeing it or someone knows a root cause. Thanks! -- Ry4an Brase 612-626-6575 Software Developer Application Development University of Minnesota Supercomputing Institutehttp