Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets to blame?

2014-11-14 Thread Lance Parsons
From: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Aaron Petkau Sent: Wednesday, October 01, 2014 5:32 PM To: Lance Parsons Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets to blame? Are you

Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets to blame?

2014-11-10 Thread John Chilton
-boun...@lists.bx.psu.edu] On Behalf Of Aaron Petkau Sent: Wednesday, October 01, 2014 5:32 PM To: Lance Parsons Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets to blame? Are you attempting to upload datasets to a Data Library

Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets to blame?

2014-11-10 Thread Ido Tamir
Kandalaft From: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Aaron Petkau Sent: Wednesday, October 01, 2014 5:32 PM To: Lance Parsons Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets

Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets to blame?

2014-11-06 Thread Lance Parsons
:*galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] *On Behalf Of *Aaron Petkau *Sent:* Wednesday, October 01, 2014 5:32 PM *To:* Lance Parsons *Cc:* galaxy-dev@lists.bx.psu.edu *Subject:* Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets to blame

Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets to blame?

2014-10-02 Thread Kandalaft, Iyad
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Aaron Petkau Sent: Wednesday, October 01, 2014 5:32 PM To: Lance Parsons Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets to blame? Are you attempting to upload datasets to a Data Library

Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets to blame?

2014-10-02 Thread Lance Parsons
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] *On Behalf Of *Aaron Petkau *Sent:* Wednesday, October 01, 2014 5:32 PM *To:* Lance Parsons *Cc:* galaxy-dev@lists.bx.psu.edu *Subject:* Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets to blame? Are you attempting to upload datasets to a Data

[galaxy-dev] Jobs stuck in new state - Data Library datasets to blame?

2014-10-01 Thread Lance Parsons
Recently, I updated our Galaxy instance to use two processes (one for web, the other as a job handler). This has been working well, except in a few cases. I've noticed that a number of jobs get stuck in the new status. In a number of cases, I've resolved the issue by downloading and

Re: [galaxy-dev] Jobs stuck in new state - Data Library datasets to blame?

2014-10-01 Thread Aaron Petkau
Are you attempting to upload datasets to a Data Library, and then copy to a history and run jobs on them right away? I've run into issues before where if I attempt to run a job on a dataset in a library before it is finished being uploaded and processed, then the job gets stuck in a queued state