Re: [galaxy-dev] which .loc file for SAM to BAM?

2012-11-01 Thread Andreas Kuntzagk
Hi, thank you for the pointer. I was only looking at this wiki page: http://wiki.g2.bx.psu.edu/Admin/Data%20Integration Maybe this should point to your page? regards, Andreas On 31.10.2012 17:50, Carlos Borroto wrote: On Wed, Oct 31, 2012 at 11:30 AM, Andreas Kuntzagk

Re: [galaxy-dev] which .loc file for SAM to BAM?

2012-11-01 Thread Carlos Borroto
Well is not my page, I'm not directly related to Galaxy. Still, I think Galaxy Project would be happy to receive updates to the wiki, maybe a complete table can be added to the page you are mentioning. On Thu, Nov 1, 2012 at 4:27 AM, Andreas Kuntzagk andreas.kuntz...@mdc-berlin.de wrote: Hi,

Re: [galaxy-dev] which .loc file for SAM to BAM?

2012-11-01 Thread Andreas Kuntzagk
Sorry for my unclear sentence, I meant the page you pointed me too. regards, Andreas On 01.11.2012 14:50, Carlos Borroto wrote: Well is not my page, I'm not directly related to Galaxy. Still, I think Galaxy Project would be happy to receive updates to the wiki, maybe a complete table can be

[galaxy-dev] which .loc file for SAM to BAM?

2012-10-31 Thread Andreas Kuntzagk
Hi, I'm still setting up a local galaxy. Currently I'm testing the setup of NGS tools. If I try SAM to BAM for a BAM file that has hg18 set as build I get a message that Sequences are not currently available for the specified build. I guess that I have either to manipulate one of the .loc

Re: [galaxy-dev] which .loc file for SAM to BAM?

2012-10-31 Thread Carlos Borroto
On Wed, Oct 31, 2012 at 11:30 AM, Andreas Kuntzagk andreas.kuntz...@mdc-berlin.de wrote: Hi, I'm still setting up a local galaxy. Currently I'm testing the setup of NGS tools. If I try SAM to BAM for a BAM file that has hg18 set as build I get a message that Sequences are not currently