Re: [galaxy-dev] Error when adding datasets

2011-06-03 Thread Louise-Amélie Schmitt
Le 02/06/2011 21:23, Nate Coraor a écrit : Louise-Amélie Schmitt wrote: On Thu, 2 Jun 2011 11:48:55 -0400, Nate Coraorn...@bx.psu.edu wrote: Greg Von Kuster wrote: Hello Louise, I've CC'd Nate on this as he may be able to help - although no guarantees. I'm not expert enough in this area to

Re: [galaxy-dev] Error when adding datasets

2011-06-02 Thread Nate Coraor
Louise-Amélie Schmitt wrote: Hello everyone I have an issue when trying to import new datasets or when putting a dataset into a history. I saw Edward Kirton had the same problem but he got no answer: http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-May/002732.html Here is the error

Re: [galaxy-dev] Error when adding datasets

2011-06-02 Thread Louise-Amélie Schmitt
On Thu, 2 Jun 2011 11:48:55 -0400, Nate Coraor n...@bx.psu.edu wrote: Greg Von Kuster wrote: Hello Louise, I've CC'd Nate on this as he may be able to help - although no guarantees. I'm not expert enough in this area to know where to look for the cause. Perhaps someone in the community

Re: [galaxy-dev] Error when adding datasets

2011-06-02 Thread Nate Coraor
Louise-Amélie Schmitt wrote: On Thu, 2 Jun 2011 11:48:55 -0400, Nate Coraor n...@bx.psu.edu wrote: Greg Von Kuster wrote: Hello Louise, I've CC'd Nate on this as he may be able to help - although no guarantees. I'm not expert enough in this area to know where to look for the cause.

Re: [galaxy-dev] Error when adding datasets

2011-05-03 Thread Louise-Amelie Schmitt
Hello, and sorry for the late reply All the answers are yes, since it didn't stop working at all. I fear transferring the data again now... Hans-Rudolf Hotz wrote: well, do it the hard way and start from square one: - is galaxy working out of the box (fresh checkout, using SQLite) - is

Re: [galaxy-dev] Error when adding datasets

2011-05-03 Thread Louise-Amelie Schmitt
Ok, now it's the other install that doesn't work anymore. Looks like a cuckoo's nest, they must be sharing something they shouldn't, first arrived first served. But I really don't see what's going wrong: - They run from distinct galaxy copies - They use different databases - They use

Re: [galaxy-dev] Error when adding datasets

2011-04-18 Thread Louise-Amélie Schmitt
Hello again I tried deleting the compiled templates like Sarah Diehl did for her user registration issue: first thank you for your help. I tried reloading everything, cleared the cache of my browser and tried it on a different computer whose browser never before was on the Galaxy website. All

Re: [galaxy-dev] Error when adding datasets

2011-04-18 Thread Hans-Rudolf Hotz
On 04/18/2011 11:28 AM, Louise-Amélie Schmitt wrote: Hello again I tried deleting the compiled templates like Sarah Diehl did for her user registration issue: first thank you for your help. I tried reloading everything, cleared the cache of my browser and tried it on a different computer

Re: [galaxy-dev] Error when adding datasets

2011-04-15 Thread Hans-Rudolf Hotz
On 04/14/2011 07:36 PM, Greg Von Kuster wrote: Hello Louise, I've CC'd Nate on this as he may be able to help - although no guarantees. I'm not expert enough in this area to know where to look for the cause. Perhaps someone in the community can help as well. It is likely that LDAP is

Re: [galaxy-dev] Error when adding datasets

2011-04-15 Thread Hans-Rudolf Hotz
On 04/15/2011 10:56 AM, Louise-Amélie Schmitt wrote: Hi Hans, thanks for your reply. - is your PostgreSQL database in sync with the database folder? I'm sorry I'm not sure I get what you mean, what folder is it? the folder where you keep the datasets, eg: your local

Re: [galaxy-dev] Error when adding datasets

2011-04-15 Thread Louise-Amélie Schmitt
Ooops, this is very right, I totally forgot about that. It woud have become problematic at some point I guess. Thank you for pointing this out! I changed it so the new database is associated with brand new appropriate directories. (and dropped and re-created the db again) But I keep getting the

Re: [galaxy-dev] Error when adding datasets

2011-04-14 Thread Louise-Amélie Schmitt
Hello Greg Thank you for answering. Please find the answers after each question. Le jeudi 14 avril 2011 à 10:19 -0400, Greg Von Kuster a écrit : Hello Louise, I do not think this issue is related to the Galaxy eggs, but instead looks like a data issue of some kind. Please replly back

Re: [galaxy-dev] Error when adding datasets

2011-04-14 Thread Greg Von Kuster
I assume when you dropped the old database and recreated the new, empty database, you made sure the database connection string in universe_wsgi.ini was correctly set. if so, when you started up Galaxy, it would have created all of the required tables in the new database, and they would all be

Re: [galaxy-dev] Error when adding datasets

2011-04-14 Thread Greg Von Kuster
On Apr 14, 2011, at 11:49 AM, Louise-Amélie Schmitt wrote: Here is the result I got from the debug statements: galaxy.web.controllers.library_common DEBUG 2011-04-14 17:46:02,286 ### history: None This is the problem - when you registered normally, a history would have been automatically

Re: [galaxy-dev] Error when adding datasets

2011-04-14 Thread Louise-Amélie Schmitt
The thing is, we use LDAP logging so we can't even access the website without logging in. Moreover, when I logged in, I arrived on the data analysis page where the automatic unnamed history was obviously created in the history panel. I forgot to mention we have issues creating and deleting

Re: [galaxy-dev] Error when adding datasets

2011-04-14 Thread Greg Von Kuster
Hello Louise, I've CC'd Nate on this as he may be able to help - although no guarantees. I'm not expert enough in this area to know where to look for the cause. Perhaps someone in the community can help as well. It is likely that LDAP is playing a role in this behavior. On Apr 14, 2011, at