Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-07-05 Thread Thon Deboer
Is this conference open for anyone or just (self appointed?) Czars? :) Regards, Thon de Boer, Ph.D. Bioinformatics Guru +1-650-799-6839 thondeb...@me.com LinkedIn Profile On Jun 28, 2012, at 2:14 AM, Sebastian Schaaf wrote: Also hello to everyone, As I browsed through those tabs which

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-07-05 Thread Ann Black-Ziegelbein
For anyone :) Please join us on Monday - Thanks, Ann On 7/5/2012 4:15 PM, Thon Deboer wrote: Is this conference open for anyone or just (self appointed?) Czars? :) Regards, Thon de Boer, Ph.D. Bioinformatics Guru +1-650-799-6839 thondeb...@me.com mailto:thondeb...@me.com LinkedIn Profile

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-06-28 Thread Sebastian Schaaf
Also hello to everyone, As I browsed through those tabs which are open for weeks I rediscovered the online survey Interested in Deploying Your Own Local Galaxy? connected to this thread here. The last response I could find in this context was the one below which was written by Ann. To make it

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-06-28 Thread Ann Black-Ziegelbein
Hi All - I have dropped the ball on this one. We at Iowa have gotten bogged down in storage issues with galaxy (our existing storage was crashing) and have been spending all my time evaluating different storage solutions under load: zfs, gluster, lustre, nfs for our galaxy and high

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-06-28 Thread Sebastian Schaaf
Thanks Ann for your quick reply, sounds good. I just submitted my info in reply to the online survey. Regarding your issues: don't worry, I think we all suffer from the same things, basically :). No need to apologize. As I stated in the submitted web form we had similar problems with file

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-05-10 Thread Edward Hills
RE: The chat about NZ/AUS communication us here at Otago University (Dunedin, NZ) are very very keen for this. Please email us at edward.hi...@otago.ac.nz if this does decide to take off :) Cheers, Ed ___ Please keep all replies on the list

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-05-10 Thread Greg Edwards
Clare, I'm running an AWS Cloudman instance (on US East region) from Sydney for a developing suite of proteomics PTM tools in Perl, for use mainly by http://sydney.edu.au/science/molecular_bioscience/ and http://www.sdu.dk/en/om_sdu/institutter_centre/bmb_biokemi_og_molekylaer_biologi Hard to

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-05-09 Thread Clare Sloggett
Hi all, I'm at one of the places Ross mentions (VLSCI), with Enis - among other things we're deploying Galaxy CloudMan on the new Australian Research Cloud. Just from talking to people I feel that local institutions that have installed their own Galaxy, and are customising it, wrapping tools for

Re: [galaxy-dev] Interested in speaking with other, institutions deploying Galaxy locally?

2012-05-02 Thread Sarah Maman
Hello, This is a great idea. I'm interested. Thanks ! Sarah Maman -- Message: 1 Date: Fri, 27 Apr 2012 13:45:16 -0500 From: Ann Black-Ziegelbein annbl...@eng.uiowa.edu To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev]

Re: [galaxy-dev] Interested in speaking with other, institutions deploying Galaxy locally?

2012-05-02 Thread Peter van Heusden
We have a small collaboration between institutions in the greater Cape Town region (UCT, UWC, Stellenbosch) on this topic (the so-called Pipelines group). If anyone in South Africa is interested in talking about these topics, please get in touch because we could share expertise. Peter SANBI - UWC

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-05-02 Thread Ann Black-Ziegelbein
Hello everyone! Here is a link to a brief survey about how you are using, or plan to use Galaxy locally. If you could take a moment to complete the survey, it will help steer the teleconferences as we get going (and also alleviate having to spend time on the call providing the same

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-05-02 Thread Greg Edwards
Ann, I'm interested. I'm running a Galaxy instance on AWS Cloud, using the standard Galaxy Cloudman. Based in Sydney, Aus and also users at SDU, Odense, Denmark. My timezone for a conf call would be UTC +10 as for some others here. Greg Edwards On Sat, Apr 28, 2012 at 4:45 AM, Ann

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-30 Thread Gianmauro Cuccuru
On 04/27/2012 08:45 PM, Ann Black-Ziegelbein wrote: Hi everyone - Here at the University of Iowa we are working on deploying Galaxy locally for campus wide access. I am interested in forming a community of other institutions trying to deploy Galaxy locally and mange/operate it on a broad

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-30 Thread Hans-Rudolf Hotz
Hi Ann I am definitively interested in any form of collaboration - thank you very much for bringing up this idea! However, I also share some of the concerns which have been raised by others. Even in Europe, we sometimes struggle to coordinate a conference call with the Americas and very

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-30 Thread Zhibin Lu
Hi, We have two galaxy instances installed within our institute, and I am very interested in communicating with other galaxy users. Please count me in. Zhibin Lu Bioinformatics Support: Databases Applications Ontario Institute for Cancer Research MaRS Centre, South Tower 101

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-30 Thread Ryan Golhar
Agreed. User driven is good. Having developer(s) available to answer questions would be helpful...that's what I was alluding to... On Sun, Apr 29, 2012 at 10:37 PM, Dave Clements cleme...@galaxyproject.orgwrote: Hi Ryan, Ann, and everyone else I second what Nate says (I always do :-). I

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-30 Thread Ann Black-Ziegelbein
I would like to thank everyone for their responses! I am working on a few things to hopefully get us going in the right direction: 1) a brief online web survey for everyone to fill out that will help us gauge the background of those interested in participation and help steer content for the

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-29 Thread Nikolai Vazov
Hi, all, We are in the process of setting up Galaxy as a big university framework for the entire university and world-wide free academic access. We currently have a portal (www.bioportal.uio.no) which is bioinformatics oriented. The Galaxy we are setting up will give access to more than 100

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-29 Thread Nate Coraor
Hi Ryan, I like that it's user-directed, and we could be there to provide input, although if help is needed to organize the call we could probably assist with that. I plan to be on the call as often as my schedule allows, and I believe some of the other developers on the team would also be

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-29 Thread Fields, Christopher J
We've also started a local deployment for University of Illinois Urbana-Champaign. So I would be interested in participating. Chris On Apr 27, 2012, at 2:32 PM, David Hoover hoove...@helix.nih.gov wrote: Not a bad idea. Most of the conversations on this list are very limited and detailed

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-29 Thread Dave Clements
Hi Ryan, Ann, and everyone else I second what Nate says (I always do :-). I too like that it is user driven. And, while I am not a developer, I do plan on being on the call as often as possible. I can also offer my support for logistical and any other support. Ann, please let me know if you

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-29 Thread Ross
To all interested in Dave's suggestion: IMHO, an Australian/New Zealand Galaxy user/deployer/developer group will be worth setting up and will be viable if it solves specific problems that aren't adequately addressed by existing networks and communication channels - otherwise it will be JAFUG

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-28 Thread Ryan Golhar
One question - Are the Galaxy developers involved in this or is this for user's only? It may be helpful to have developers on the call to provide information that users do not necessarily have. On Fri, Apr 27, 2012 at 8:21 PM, steve.mcma...@csiro.au wrote: Sounds like a good idea to me. I'm

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-28 Thread Edward Hills
Hi Ann, We are in the process of doing the same thing here at the University of Otago (New Zealand). If we are able to sort something via the timezone difference (we are GMT+12, first to see the sun!) we would very much be interested. Cheers, Ed Hi everyone - Here at the University of Iowa we

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-27 Thread Ryan Golhar
This is a great idea. On Fri, Apr 27, 2012 at 2:45 PM, Ann Black-Ziegelbein annbl...@eng.uiowa.edu wrote: Hi everyone - Here at the University of Iowa we are working on deploying Galaxy locally for campus wide access. I am interested in forming a community of other institutions trying to

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-27 Thread Nate Coraor
On Apr 27, 2012, at 3:14 PM, Ryan Golhar wrote: This is a great idea. +1 On Fri, Apr 27, 2012 at 2:45 PM, Ann Black-Ziegelbein annbl...@eng.uiowa.edu wrote: Hi everyone - Here at the University of Iowa we are working on deploying Galaxy locally for campus wide access. I am interested

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-27 Thread Langhorst, Brad
I'm interested On Apr 27, 2012, at 3:14 PM, Ryan Golhar wrote: This is a great idea. On Fri, Apr 27, 2012 at 2:45 PM, Ann Black-Ziegelbein annbl...@eng.uiowa.edumailto:annbl...@eng.uiowa.edu wrote: Hi everyone - Here at the University of Iowa we are working on deploying Galaxy locally for

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-27 Thread David Hoover
Not a bad idea. Most of the conversations on this list are very limited and detailed in scope, dealing with the minutia of tools and variables. There isn't much on the bird's eye view. I'm in. On Apr 27, 2012, at 2:45 PM, Ann Black-Ziegelbein wrote: Hi everyone - Here at the University

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-27 Thread Mohammad Heydarian
Great idea. In! Cheers, Mo Heydarian PhD candidate The Johns Hopkins School of Medicine Department of Biological Chemistry 725 Wolfe Street 414 Hunterian Baltimore, MD 21205 On Fri, Apr 27, 2012 at 2:45 PM, Ann Black-Ziegelbein annbl...@eng.uiowa.edu wrote: Hi everyone - Here at the

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-27 Thread JIE CHEN
Cool idea. I am very interested in it. One question: how could we attend the conference since we all at different place? Cheers, Tyler On Fri, Apr 27, 2012 at 12:33 PM, Mohammad Heydarian mheyd...@jhmi.eduwrote: Great idea. In! Cheers, Mo Heydarian PhD candidate The Johns Hopkins School

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-27 Thread Ann Black-Ziegelbein
Thanks everyone! Glad to find some common interest. I will see if I can arrange an initial call. Hi Tyler - I was hoping we could just do a voice conference call. It would be great to meet those face to face at the Galaxy Conference in Chicago if some are attending. Thanks! Ann On

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-27 Thread Anne Pajon
I'm interested too. On 27 Apr 2012, at 21:13, Ann Black-Ziegelbein wrote: Thanks everyone! Glad to find some common interest. I will see if I can arrange an initial call. Hi Tyler - I was hoping we could just do a voice conference call. It would be great to meet those face to face at

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-27 Thread Cittaro Davide
Here's another interested! On Apr 27, 2012, at 8:45 PM, Ann Black-Ziegelbein wrote: Hi everyone - Here at the University of Iowa we are working on deploying Galaxy locally for campus wide access. I am interested in forming a community of other institutions trying to deploy Galaxy locally and

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-27 Thread Shantanu Pavgi
We are interested too. Thanks Ann for taking the initiative. -- Shantanu On Apr 27, 2012, at 3:38 PM, Anne Pajon wrote: I'm interested too. On 27 Apr 2012, at 21:13, Ann Black-Ziegelbein wrote: Thanks everyone! Glad to find some common interest. I will see if I can arrange an