Re: [galaxy-dev] Main toolshed broken??

2012-12-05 Thread Adam Carr (NBI)
. -Original Message- From: Greg Von Kuster [mailto:g...@bx.psu.edu] Sent: 04 December 2012 16:40 To: Adam Carr (NBI) Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Main toolshed broken?? Hi Adam, I believe this is related to the invalid xml definition in your repository's

Re: [galaxy-dev] Main toolshed broken??

2012-12-05 Thread Adam Carr (NBI)
or options.missing_tool_data_table_name: AttributeError: 'str' object has no attribute 'tool_data_table' From: Greg Von Kuster [mailto:g...@bx.psu.edu] Sent: 05 December 2012 13:43 To: Adam Carr (NBI) Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Main toolshed broken?? ok, I'll wait

Re: [galaxy-dev] Main toolshed broken??

2012-12-05 Thread Dave Bouvier
*.*missing_tool_data_table_name*:*| *AttributeError: 'str' object has no attribute 'tool_data_table'* *From:*Greg Von Kuster [mailto:g...@bx.psu.edu] *Sent:* 05 December 2012 13:43 *To:* Adam Carr (NBI) *Cc:* galaxy-dev@lists.bx.psu.edu *Subject:* Re: [galaxy-dev] Main toolshed broken?? ok, I'll wait

Re: [galaxy-dev] Main toolshed broken??

2012-12-04 Thread Greg Von Kuster
Hi Franco, The server error is thrown when your file named tool_data_table_conf.xml.sample is parsed. The content of this file is the following. !-- Locations of indexes in the bisulphite conversion -- table name=bismark_indexes comment_char=# columnsvalue, dbkey, name, path/columns

Re: [galaxy-dev] Main toolshed broken??

2012-12-04 Thread Greg Von Kuster
Hi Adam, I believe this is related to the invalid xml definition in your repository's tool_data_table_conf.xml.sample file which I discussed in a previous reply. Greg Von Kuster On Dec 4, 2012, at 8:08 AM, Adam Carr (NBI) wrote: Hi, I hadn't caught this as I posted my query to the list,