Re: [galaxy-dev] RFC: Cheetah template in tool_dependencies.xml

2013-07-23 Thread Dave Bouvier
Björn, I've uploaded the modified tool_dependencies.xml to devteam's package_emboss_5_0_0 repository on the test tool shed, and verified that it works. Again, thank you for your contributions. --Dave B. On 7/7/13 18:59:57.000, Björn Grüning wrote: Hi Greg, bitbucket has a downtime so I

Re: [galaxy-dev] RFC: Cheetah template in tool_dependencies.xml

2013-07-23 Thread Björn Grüning
Hi Dave, Björn, I've uploaded the modified tool_dependencies.xml to devteam's package_emboss_5_0_0 repository on the test tool shed, and verified that it works. Again, thank you for your contributions. Great, thanks! --Dave B. On 7/7/13 18:59:57.000, Björn Grüning wrote: Hi

Re: [galaxy-dev] RFC: Cheetah template in tool_dependencies.xml

2013-07-08 Thread James Taylor
It probably makes sense to specify the template type in this case. Maybe an additional attribute, language='cheetah' ? On Sun, Jul 7, 2013 at 1:19 PM, Björn Grüning bjoern.gruen...@pharmazie.uni-freiburg.de wrote: action type=template_command #if env.get('X11_LIB_DIR', False) and

Re: [galaxy-dev] RFC: Cheetah template in tool_dependencies.xml

2013-07-08 Thread Björn Grüning
Hi James, It probably makes sense to specify the template type in this case. Maybe an additional attribute, language='cheetah' ? My first suggestion was action type=cheetah_command to reflect the template engine. I'm fine with both. On Sun, Jul 7, 2013 at 1:19 PM, Björn Grüning

Re: [galaxy-dev] RFC: Cheetah template in tool_dependencies.xml

2013-07-08 Thread Greg Von Kuster
I'll soon be committing a slightly altered version of your patch which includes a language attribute for the template_command action type. On Jul 8, 2013, at 10:02 AM, Björn Grüning bjoern.gruen...@pharmazie.uni-freiburg.de wrote: Hi James, It probably makes sense to specify the template

Re: [galaxy-dev] RFC: Cheetah template in tool_dependencies.xml

2013-07-08 Thread Greg Von Kuster
Hello Björn, Thanks very much for the patch - I've committed alsightly alterered verson of it in changetset 10204:afec613d77fa which is currently running on the test tool shed. Greg Von Kuster On Jul 7, 2013, at 6:59 PM, Björn Grüning bjoern.gruen...@pharmazie.uni-freiburg.de wrote: Hi

Re: [galaxy-dev] RFC: Cheetah template in tool_dependencies.xml

2013-07-07 Thread Greg Von Kuster
Hello Björn, This would be great! I'm not sure about the type attribute - action type=cheetah_command may be ok, but maybe a more generic type like action type=template_command would be better. I'm not quite sure, so go with what you feel is best. Thanks for looking into this! Greg Von

Re: [galaxy-dev] RFC: Cheetah template in tool_dependencies.xml

2013-07-07 Thread Björn Grüning
Hi Greg, Hello Björn, This would be great! I'm not sure about the type attribute - action type=cheetah_command may be ok, but maybe a more generic type like action type=template_command would be better. I'm not quite sure, so go with what you feel is best. I come up with the

Re: [galaxy-dev] RFC: Cheetah template in tool_dependencies.xml

2013-07-07 Thread Greg Von Kuster
Hi Björn, This is great. A pull request or a patch is fine. Whatever one is most convenient for you. The code doesn't have to be pretty, just functional. We can always pretty it up later. Thanks very much for doing this! Greg On Jul 7, 2013, at 1:19 PM, Björn Grüning

Re: [galaxy-dev] RFC: Cheetah template in tool_dependencies.xml

2013-07-07 Thread Björn Grüning
Hi Greg, bitbucket has a downtime so I have attached a patch. I will create tomorrow a pull request if I find time. It will work as described and we have now a new variable (__is64bit__) that we can use to determine if python is running under 64bit (assuming that the rest is also 64bit-ish).