Re: [galaxy-dev] Some plugin for digital normalization

2014-01-08 Thread Cristian Alejandro Rojas
Sorry for the late answer. Thank you so much Michael. I have tested the plugin and everything now works fine! Cheers 2013/12/29 Michael R. Crusoe mcru...@msu.edu You are doing nothing wrong Cristian, it was my error. I've updated the tool definition file; it is now at

Re: [galaxy-dev] Some plugin for digital normalization

2014-01-08 Thread Michael R. Crusoe
That is wonderful to hear. I'm adding more khmer Galaxy wrappers and the next release of khmer will have the necessary modifications included. Please let me know if there is a specific feature you'd like to see. On Jan 8, 2014 11:09 PM, Cristian Alejandro Rojas alejandro.0...@gmail.com wrote:

Re: [galaxy-dev] Some plugin for digital normalization

2013-12-29 Thread Michael R. Crusoe
You are doing nothing wrong Cristian, it was my error. I've updated the tool definition file; it is now at https://github.com/ged-lab/khmer/blob/output_naming1 /scripts/normalize-by-median.xml And I've updated the code base. You'll need to run the following to update your installation pip

Re: [galaxy-dev] Some plugin for digital normalization

2013-12-26 Thread Michael R. Crusoe
From: Cristian Alejandro Rojas alejandro.0...@gmail.com Date: December 26, 2013 2:37 AM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] Some plugin for digital normalization Hello all, I've been searching in tool sheds(main and test) for a plugin to do digital normalization of reads,

Re: [galaxy-dev] Some plugin for digital normalization

2013-12-26 Thread Cristian Alejandro Rojas
Thank u michael. I downloaded and install khmer to my machine, the i have include your galaxy plugin in my local instance, but when I try to run this from the web interface i'm getting this error: Traceback (most recent call last): File