FYI
Original Message
Subject:System built on Galaxy
Date: Wed, 12 Jan 2011 13:29:11 +
From: Andy Brown
To: David Jackson , Marina Gourtovaia
, Guoying Qi , s...@sanger.ac.uk,
John O'Brien
Just saw this web post about a system built on top of galaxy. It d
Hello,
This is the first question I ask on this list, please let me know if I'm 'doing
it wrong'.
Currently I'm trying to implement a workflow that uses a sort of microarray
data which consists of one CSV file for each experiment done. The first step in
the workflow is to preprocess the data
Thanks for the tip, Kelly - I tested this on my workstation at revision
4640 and am seeing the same behavior. The output SAM file is 1.9G. I
will pull the latest changes from the repository and re-test.
By the way, is 0.12.1 still the preferred version of bowtie for HEAD?
The NGSLocalSetup
Hi,
We are running Bowtie 0.12.7 currently. I've updated the wiki to
reflect the current version of the tools we're using (thanks for
letting us know it was out of date!).
Regards,
Kelly
On Jan 13, 2011, at 11:39 AM, Branden Timm wrote:
Thanks for the tip, Kelly - I tested this on my wor
Hi,
Updating to the latest revision has solved the bowtie hanging
problem. Thanks very much for your help!
-Branden
On 1/13/2011 10:52 AM, Kelly Vincent wrote:
Hi,
We are running Bowtie 0.12.7 currently. I've updated the wiki to
reflect the current version of the tools we're using (thank
Can Galaxy be restricted to specific users?
Can it be integrated with Kerberos authentication?
Can it be easily restricted to certain IP addresses or IP ranges?
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On Jan 13, 2011, at 2:15 PM, Ben Passarelli wrote:
Can it be easily restricted to certain IP addresses or IP ranges?
no problem, use a firewall
--
Glen L. Beane
Software Engineer
The Jackson Laboratory
Phone (207) 288-6153
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The best way to do all of these things is likely by proxying through a
web server like Apache. Galaxy can be configured to use the user id
provided by apache (REMOTE_USER) and to not allow creation of new
accounts. Similarly, you can restrict access to certain addresses using
apaches Allow/Deny rul
