[galaxy-dev] Fwd: [galaxy-user] operating on, and getting at, large files in galaxy...

2011-02-09 Thread Kelly Vincent
(I'm redirecting this to the galaxy-dev list, which is more appropriate since it's about a local installation.) Begin forwarded message: From: Nick Schurch n.schu...@dundee.ac.uk Date: February 9, 2011 7:17:45 AM EST To: galaxy-u...@lists.bx.psu.edu Subject: [galaxy-user] operating on, and

Re: [galaxy-dev] SLURM queue

2011-02-09 Thread Marina Gourtovaia
Try adding export SGE_ROOT=/directory where drmaa sits or one-two higher I had a similar problem compiling a perl wrapper for drmaa (LSF). I found this SGE_ROOT used in the makefile for generating a SWIG perl wrapper for the drmaa.h header. And also there were some assumptions about the

Re: [galaxy-dev] Barcode/adapter/primer trimming/filtering of sequences/reads

2011-02-09 Thread Jennifer Jackson
Hi Peter - Regular expressions are a great, simple, and often fast solution to cleaning up seqs - glad that it is working for you. I am sure others will be interested in your tools, too, once you have them ready for the Tool Shed. Thanks for all of your contributions to Galaxy! Jen On