Dear Galaxy developers,
I'm trying to create a tool to export galaxy interval data to InterMine
instances.
Firstly, based on the tool to send dataset to EpiGRAPH, I created one to
FlyMine, it's working on my local instance. Then I tried a bit complex
one, to integrate multiple mines in one
Hi all,
I have got numpy and gnuplot on speaking terms. But now, trying to use
the barchart, I get following error:
gnuplot set style histogram clustered gap 5 title offset character 0, 0, 0
^
line 0: expecting 'data', 'function', 'line', 'fill' or 'arrow'
Hello everyone -
I am also running into this issue trying to get galaxy integrated with our sun
grid engine. My galaxy user's .bash_profile does not appear to get sourced
when the jobs run. I augmented the sample sam_filter.py tutorial such that it
output path and user info so I could see how
I figured out a solution. The sun grid engine will strip back the env of what
gets passed along with the job submission. I added a native drmaa option, -V,
which caused the env vars found on the shell that submits the job to be passed
along. Therefore all the environment setup I did in my
Hi everyone,
I've been getting my feet wet with Galaxy development working to get some of
the rexpression tools online, and I've run into a snag that I've traced back to
a set_meta datatype method not being able to find a file from which it wants to
extract metadata. After reading the code, I
Ann Black wrote:
I figured out a solution. The sun grid engine will strip back the env of
what gets passed along with the job submission. I added a native drmaa
option, -V, which caused the env vars found on the shell that submits the job
to be passed along. Therefore all the environment
Thanks Nate! I did not know about sge_request - and that helps. I played
around with using -V and -v in sge_request some and it works similar to
specifying -V (or -v) in my universe_wsgi.ini file. I am new to galaxy and I
am working on getting it instantiated locally. Is there an advantage
Hi,
Has anyone set up ProFTPd successfully on Ubuntu 10.04 to enable FTP upload
on Galaxy? I followed the instructions on this link (
http://wiki.g2.bx.psu.edu/Admin/Config/Upload%20via%20FTP) but it doesn't
work.
Thanks,
Luobin
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