Hi Ivan,
For the displays at external resources that rely on partial gets/responses
(e.g. bams, bigWig, etc), Galaxy will need to be put behind a proxy, e.g. nginx
with x_accel_redirect or apache with xsendfile. Please see the production
server instructions on the wiki for information on
A colleague of mine posted this on the Users list ... 4 days later and
no replies! I'm hoping that one of the Devs can shed a bit of light
---
A peculiar bug, presented for your
Could you send me the traceback and perhaps a copy of the misbehaving tool
config files? I'll be happy to take a look.
Thanks!
Dannon
On Nov 21, 2011, at 9:53 AM, Steven Platt wrote:
A colleague of mine posted this on the Users list ... 4 days later and
no replies! I'm hoping that one of
Dannon,
Thanks for agreeing to have a look at this. Configs and traceback are
attached.
Just to clarify, these tools work without error when run individually,
and it's only when we try and generate a workflow that problems occur.
Cheers
Steve
-Original Message-
From: Dannon Baker
Can anyone answer this, please, or point me to the relevant documentation?
On 07/11/2011, Amelia Ireland airel...@lbl.gov wrote:
Apologies in advance for the newbie question.
I have a script that uses various UniProt web services. The script
sends off a request to the UniProt server, waits
Hi,
I found that the ROD file for the 'Unified Genotyper' tool, can be
only vcf format. However for 'Count Covariates' and 'Indel Realigner',
it can be vcf o, gatk_dbsnp or bed. Is this a bug or there is a
limitation on GATK?
Thanks,
Carlos
Hi Carlos,
Thanks for reporting this issue. Most (but not all) of the ROD files for the
GATK now require VCF. I have updated Indel Realigner in changeset
6320:945c7a47755f to reflect this.
Thanks for using Galaxy,
Dan
On Nov 21, 2011, at 4:27 PM, Carlos Borroto wrote:
Hi,
I found that
