[galaxy-dev] Tool creation: how to restrict input dataset selector to appropriate file types?

2011-12-07 Thread Louise-Amélie Schmitt
Hello, I'm running in a strange issue which I cannot seem to find a solution for. In every tool I created from scratch, the input dataset selector does not only include the datasets corresponding to the file types I set in the format= attribute in the param tag in my XML tool file, but

Re: [galaxy-dev] Tool creation: how to restrict input dataset selector to appropriate file types?

2011-12-07 Thread Dannon Baker
The only thing that sticks out to me is the 'export' format listed in inputs. What are the children datatypes of export, or how is that set up? The filter logic automatically includes all children datatypes of the specified formats. -Dannon On Dec 7, 2011, at 5:10 AM, Louise-Amélie Schmitt

Re: [galaxy-dev] Tool creation: how to restrict input dataset selector to appropriate file types?

2011-12-07 Thread Louise-Amélie Schmitt
Hi Dannon, and thanks for the answer. Problem solved: The Export class had somehow disappeared from the tabular.py file, most likely during a failed merge. Yeah, I indeed stupidly missed something huge... Sorry for wasting your time! Best, L-A Le 07/12/2011 12:35, Dannon Baker a écrit :

[galaxy-dev] Configuring Toolsheds

2011-12-07 Thread Zachary Charlop-Powers
Hello Galaxy, I have been having trouble getting Toolsheds to work on a local install of Galaxy. Based on the error messages I think that I have not correctly modified the nginx server port forwarding and/or the community_wsgi.ini file. If anyone has successfully setup a local toolshed

Re: [galaxy-dev] SICER bug in Workflow

2011-12-07 Thread Daniel Blankenberg
Hi Susan, Sorry for the delay in response. Are you still experiencing these problems? If so, would you mind sharing a history and your workflow with me and I will take a look. Thanks for using Galaxy, Dan On Sep 20, 2011, at 4:28 PM, Susan Newman wrote: I’m working on a SOLiD ChIP-Seq

Re: [galaxy-dev] Workflow API (runtime modification of tool parameters)

2011-12-07 Thread Richard Park
Hi Dannon, Thanks for the pointers. I am new to developing to galaxy and any help or guidance would be much appreciated. Are there any docs to help me understand how to code/debug galaxy? And if you have any suggestions for the general process of extending the API i would be very grateful. thanks,