Dear Sir,
Is it possible to include a localy stored HTML page in the action attribute
of the inputs tag when defining a tool ?
Best regards,
Mohammed J. Chbeib
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Mohammed J. Chbeib
+49-172-2044731
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Hello Vipin,
Good to see this. just a quick question, does your interface has the
functionality to define groups (say normal or control) for replicates/samples,
as the way we define in edgeR/DESeq R script.
Carlos, I think BAM input would be okay as it can be connected with tophat in
the
Hi Greg,
I made a tool for Galaxy which produces a normal XML output file and next to
that it also produces a HTML report with some quick summarized details for the
user.
I could solve this by using 2 output files, but I don't want to keep the
history as concise as possible. To I found the
On Mon, Apr 2, 2012 at 2:00 PM, Lukasse, Pieter pieter.luka...@wur.nl wrote:
Hi Greg,
I made a tool for Galaxy which produces a normal XML output file and next to
that it also produces a HTML report with some quick summarized details for
the user.
I could solve this by using 2 output files,
Hi Greg,
If it is most likely a configuration error, I will check my settings,
and let you know my progress.
But one note: I do not have a hgweb.config file. Where is it supposed to
reside? I cannot find this info on the toolshed wiki.
Joachim
On 04/02/2012 03:30 PM, Greg Von Kuster
It should be in your Galaxy installation directory, and your on-disk
repositories will be in a directory under the setting you've defined for the
file_path configuration in your community_wsgi.ini file.
On Apr 2, 2012, at 10:17 AM, Joachim Jacob wrote:
Hi Greg,
If it is most likely a
Try completely dropping and recreating your tool shed database. Also, what
version of Galaxy are you running and what version of Python are you running?
What database / version are you using?
On Apr 2, 2012, at 11:13 AM, Joachim Jacob wrote:
Thanks for the suggestions, but no joy.
1. I
Hi all -
In running a samtools sort, we experienced the following exception from
Galaxy:
galaxy.jobs.runners.drmaa ERROR 2012-04-01 12:01:27,200 Job wrapper
finish method failed
Traceback (most recent call last):
File /Groups/Galaxy/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py,
line 286,
Hello all,
The April 2012 Galaxy
Updatehttp://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_04is now
available.
*Galaxy Update http://wiki.g2.bx.psu.edu/GalaxyUpdates* is a (mostly)
monthly summary of what is going on in the Galaxy community. *Galaxy Updates
* complements the *Galaxy Development News
On Mar 24, 2012, at 7:30 AM, Peter Cock wrote:
Have you seen the README file that comes with the
Blast2GO wrapper? Perhaps the 'install from toolshed'
could be tweaked to make this kind of documentation
more visible...
If you are installing a single repository that contains a file
As an alternative you can return hidden history items.
Not exactly what you want perhaps...
Van: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu]
namens Peter Cock [p.j.a.c...@googlemail.com]
Verzonden: maandag 2 april 2012 15:38
Hi,
I have installed the local galaxy. In galaxy, I noticed that the quality score
of fastq datasets have to be converted to sanger format before mapping with
bowtie etc.
But I did not find that the mapping tools (e.g. bowtie) require the quality
score of fastq datasets must be sanger format.
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