Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-29 Thread Nikolai Vazov
Hi, all, We are in the process of setting up Galaxy as a big university framework for the entire university and world-wide free academic access. We currently have a portal (www.bioportal.uio.no) which is bioinformatics oriented. The Galaxy we are setting up will give access to more than 100

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-29 Thread Nate Coraor
Hi Ryan, I like that it's user-directed, and we could be there to provide input, although if help is needed to organize the call we could probably assist with that. I plan to be on the call as often as my schedule allows, and I believe some of the other developers on the team would also be

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-29 Thread Fields, Christopher J
We've also started a local deployment for University of Illinois Urbana-Champaign. So I would be interested in participating. Chris On Apr 27, 2012, at 2:32 PM, David Hoover hoove...@helix.nih.gov wrote: Not a bad idea. Most of the conversations on this list are very limited and detailed

[galaxy-dev] Unable to set BAM Metadata

2012-04-29 Thread Ciara Ledero
This is my code for running a samtools command internally, via Galaxy: open INP, $ARGV[0] or die Cannot open file: $!; $file = $ARGV[1]; open OUT, $file or die Cannot open file: $!; @out = `/home/applications/samtools-0.1.7a/samtools view -bS $ARGV[0] 21`; print OUT @out;

[galaxy-dev] What does this line of code mean

2012-04-29 Thread Ciara Ledero
Hi all, Can I ask what this line of code does? job_wrapper.finish( stdout, stderr ) It's the one from the local.py. Cheers, CL ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions

Re: [galaxy-dev] Interested in speaking with other institutions deploying

2012-04-29 Thread Matloob Khushi
Hi Ann I am running an instance at The University of Sydney GMT+10 and would like to be part of any such online talk. Regards, Matloob ___ Please keep all replies on the list by using reply all in your mail client. To manage your

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-29 Thread Dave Clements
Hi Ryan, Ann, and everyone else I second what Nate says (I always do :-). I too like that it is user driven. And, while I am not a developer, I do plan on being on the call as often as possible. I can also offer my support for logistical and any other support. Ann, please let me know if you

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-29 Thread Ross
To all interested in Dave's suggestion: IMHO, an Australian/New Zealand Galaxy user/deployer/developer group will be worth setting up and will be viable if it solves specific problems that aren't adequately addressed by existing networks and communication channels - otherwise it will be JAFUG