Dear all,
I have installed a Galaxy instance on my local server and it runs well.
However I have some problems with directories.
I want to create a workflow that takes a directory of files (e.g. 10)
and repeatedly working on all files and then output another set of files
(10) which are piped
Also hello to everyone,
As I browsed through those tabs which are open for weeks I rediscovered
the online survey Interested in Deploying Your Own Local Galaxy?
connected to this thread here. The last response I could find in this
context was the one below which was written by Ann.
To make it
Hello Galaxy group,
I did not achieve to run again my Galaxy local instance.
The error is:
galaxy.jobs DEBUG 2012-06-28 11:57:36,785 Loaded job runner:
galaxy.jobs.runners.local:LocalJobRunner
Traceback (most recent call last):
File
Hi All -
I have dropped the ball on this one. We at Iowa have gotten bogged down
in storage issues with galaxy (our existing storage was crashing) and
have been spending all my time evaluating different storage solutions
under load: zfs, gluster, lustre, nfs for our galaxy and high
Hello,
I have never used this support route before however I have a question about a
Galaxy wrapper that I made for a python tool. I have a text input box connected
to a $command_line_spot in an attempt to run a string such as IN[4]=='gene'
on the command line (quotations included) through
Thanks Ann for your quick reply, sounds good.
I just submitted my info in reply to the online survey.
Regarding your issues: don't worry, I think we all suffer from the same
things, basically :). No need to apologize. As I stated in the submitted
web form we had similar problems with file
Hi Carlos
See: galaxy_dist/lib/galaxy/util/__init__.py
for characters that are allowed but need to be escaped
Regards, Hans
On 06/28/2012 03:14 PM, Carlos Reyes wrote:
Hello,
I have never used this support route before however I have a question
about a Galaxy wrapper that I made for a
When i try to install a tool from the main toolshed i see this error
Not Found
The resource could not be found.
No route for /repository/Noneadmin_toolshed/install_repository
I see in the archive that there was a problem but Greg fixed it..
Hi Brad,
It looks like you have some rewrite rules defined (apache?) that are messing up
your routes. Where does Noneadmin_toolshed come from?
Greg Von Kuster
On Jun 28, 2012, at 1:24 PM, Langhorst, Brad wrote:
When i try to install a tool from the main toolshed i see this error
Not
I found the problem with my blocked cookies, now I encounter a new error.
File
'/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/controllers/admin_toolshed.py',
line 291 in install_repository
description, repository_clone_url, changeset_revision = repo_info_tuple
ValueError: too many values to
Hi Brad,
Are you running the tip from Galaxy central repository? That is required for
using the main galaxy tool shed.
Greg Von Kuster
On Jun 28, 2012, at 2:16 PM, Langhorst, Brad wrote:
I found the problem with my blocked cookies, now I encounter a new error.
File
In case anyone else runs into this and needs a quick fix...
I threw in some logging.
looks like repo_info_tuple has 4 values but the admin repo code is expecting
only three.
repo_info_tuple: ['Generate simulated reads from a fasta sequence using
dwgsim',
ah...
no i'm running the most recent galaxy-dist.
looks like that one junk variable I added works for me... did i just screw up
my installation by doing that?
Brad
On Jun 28, 2012, at 3:05 PM, Greg Von Kuster wrote:
Hi Brad,
Are you running the tip from Galaxy central repository? That
in the universe_wsgi.ini file, define the server:port like thus:
smtp_server = smtp.gmail.com:587
On Thu, Jun 21, 2012 at 3:23 PM, CHEBBI Mohamed Amine
am...@abgenomica.comwrote:
Hi Galxy-team !
I have to use the smtp-server in Galaxy. However I don't see how to set
the port to 587 in the
I'm fairly certain that you'll continue to bump into issues if you're trying to
use the public tool shed while running the tip of dist. The Galaxy dist
repository is generally 4 - 8 weeks behind the Galaxy central repository, which
is what runs on the public tool sheds. You would probably be
Thanks !
2012/6/28 Edward Kirton eskir...@lbl.gov
in the universe_wsgi.ini file, define the server:port like thus:
smtp_server = smtp.gmail.com:587
On Thu, Jun 21, 2012 at 3:23 PM, CHEBBI Mohamed Amine
am...@abgenomica.com wrote:
Hi Galxy-team !
I have to use the smtp-server in Galaxy.
Hi everyone -
We are targeting a web conference call for Galaxy Deployers/Operators
for July 9th or 10th. This teleconference will be held using Elluminate
Live/Blackboard Collborate web conference - so all data (including
voice) will be over the internet. We have good luck at the
Hi,
I'm trying to register in Galaxy on the public server and under the
user tab register is greyed out? How do I register?
Susan Hester, Ph.D.
Research Biologist
Systems Biology Branch
Integrated Systems Toxicology Division (ISTD)
National Health and Environmental Effects Research Lab
US
Hello all,
The July 2012 Galaxy Update is now
availablehttp://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_07.
*Highlights:*
-
GCC2012 is July
25-27!http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_07#GCC2012_is_July_25-27.21
-
Register by July
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