Yes! That seems to have worked! Thank you very much, Le-Shin!
Are there any more of these dependencies that require these little
"patches" to build and install properly?
Morris
On 7/14/2012 8:16 PM, Le-Shin Wu wrote:
I forgot to mention the most important part. You have to modify line 100 in
Peter:
GAlaxy is looking for the FastQC executable at the following location
(see last line of error message):
/opt/galaxy/galaxy-dist/tool-data/shared/jars/FastQC/fastqc
You wrote that the fastqc binary is somewhere in Galaxy's $PATH, but is it
really in the above directory?
If not, try mov
Hi,
there seems to be an issue with pulling this egg at least since yesterday.
Some eggs are out of date, attempting to fetch...
Fetched
http://eggs.g2.bx.psu.edu/pysam/pysam-0.4.2_kanwei_b10f6e722e9a-py2.7-linux-x86_64-ucs4.egg
Fetched http://eggs.g2.bx.psu.edu/lrucache/lrucache-0.2-py2.7.egg
F
I'm getting a linker error while compiling HYPHY with the MPI make target:
Linking CXX executable HYPHYMPI
/opt/mvapich2_18a1/lib/libmpich.a(ibv_param.o):(.bss+0x70): multiple
definition of `alpha'
CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o:(.bss+0xa0): first defined
here
/usr/bin/ld: Warning:
Hi Greg,
Thanks very much for the clarification. I'll just use a local toolshed for now
since there are not many tools we need to install. When the official policy
changes it would be great if that could be flagged in the announcement for a
new release so we could start safely installing too
Hi Nate,
Thanks for the reply. Error messages are output at the bottom of the
message. Setup is that the tool has a number of inputs, one of which is
actually a directory containing reference files. We pass the directory by
allowing users to select from a menu the genome whose information is he
