Hi all,
I have a couple of question around the topic "hardware requirements" for
a server which is intended to be bought and used as concept machine for
NGS-related jobs. It should be used for development of tools and
workflows (using Galaxy, sure) as well as platform for some "alpha"
users,
On Mon, Aug 13, 2012 at 11:23 AM, Sebastian Schaaf
wrote:
> Hi all,
>
> I have a couple of question around the topic "hardware requirements" for a
> server which is intended to be bought and used as concept machine for
> NGS-related jobs. It should be used for development of tools and workflows
>
Hello,
I have a local instance, I am the only user, and I would like to use a tool
that is in the galaxy tool shed but not in my local instance.
After reading the toolshed wiki (http://wiki.g2.bx.psu.edu/Tool%20Shed) I have
a few questions.
1. Do I need a local tool shed? I need to use an availa
Hi Edward,
On Aug 10, 2012, at 8:26 PM, Edward Turk wrote:
> Hello,
>
> I have a local instance, I am the only user, and I would like to use a tool
> that is in the galaxy tool shed but not in my local instance.
> After reading the toolshed wiki (http://wiki.g2.bx.psu.edu/Tool%20Shed) I
> hav
Yes, thanks, I should have mentioned that.
I posted in both forum and dev-list, because I don't expect the forum
members and the dev-list subscribers to be a 100% identical...
Sorry for any inconvenience...
Peter Cock wrote:
On Mon, Aug 13, 2012 at 11:23 AM, Sebastian Schaaf
wrote:
Hi all
Hello,
We are having trouble running FastQC on our production server.
The original stacktrace looked like this;
Fastq failed.
Error executing FastQC. Unknown option: djava.awt.headless
Exception in thread "main" java.lang.NoClassDefFoundError:
uk/ac/bbsrc/babraham/FastQC/FastQCApplication
Caused
Hey Sebastian-
It may help to consider other pieces aside from compute nodes
that you will need, such as nodes for proxies and databases,
networking gear (such as switches and cables), and so on.
http://usegalaxy.org/production has some details, and there are
high-level pieces explained at
http
Hi Peter (and others in the Galaxy community using the tool shed),
This issue should now be resolved in the Galaxy tool shed.
Determining tool validity and whether certain change sets in the tool shed are
valid (downloadable) is very complex, so there may still be some scenarios
where things
On Mon, Aug 13, 2012 at 9:25 PM, Greg Von Kuster wrote:
> Hi Peter (and others in the Galaxy community using the tool shed),
>
> This issue should now be resolved in the Galaxy tool shed.
>
Thanks Greg,
Peter
___
Please keep all replies on
I was wondering if this question had been answered.
I'd like to be able to set metadata from within a tool as well.
Kyle
On Tue, Jul 17, 2012 at 10:01 AM, wrote:
> Hi everyone,
> How can I set dataset's metadata from within the tool?
> For example: From the command tag (in the xml tool specific
10 matches
Mail list logo
