[galaxy-dev] purging unused datasets and histories

2012-09-09 Thread Nikhil Joshi
Hi all, I'm a little confused about all the purging scripts what I want to do is purge all of the unused datasets and histories and keep the saved or published datasets, histories and workflows and data libraries. Which script do I use to do that? - Nik. -- Nikhil Joshi Bioinformatics Anal

Re: [galaxy-dev] Manage local data admin tool failed with dbkey KeyError

2012-09-09 Thread Derrick Lin
Hi guys, I found that the problematic loc files were created by CloudBioLinux and point to the reference indexes downloaded by CloudBioLinux script. I suspect that Manage Local Data cannot recognize the file structure created by CloudBioLinux? Anyhow, I removed all the loc files from CloudBioLinu

[galaxy-dev] Fwd: tophat job will not start

2012-09-09 Thread Yun Li
Hi -- I have an alignment job submitted to tophat using galaxy and the job has said that it is waiting to start for the last day. My other jobs have been running and completed and this has continued to be displayed as waiting to run. Can you please help explain or address this? Thank you, -- Yun