Thanks Peter,
It was in fact the snffier type. I changed it to sniffer
type=galaxy.datatypes.blast:BlastXml/
I am using the July07 distribution. The reason I installed the datatypes
manually is because when I did it via the directions with the toolshed all
my workflows that used blast tools
Kevin,
We decided to exclude fasta files mainly because 2bit is a lossless
compression with a much lower file size, so it would be a waste of our
users' bandwidth and time to include the (approximately) four times
larger files when 2bit is available.
--Dave B.
On 9/25/12 20:55:31.000,
On Wed, Sep 26, 2012 at 2:20 PM, Liisa Koski liisa.ko...@basf.com wrote:
Thanks Peter,
It was in fact the snffier type. I changed it to sniffer
type=galaxy.datatypes.blast:BlastXml/
And its all working now (as far as you can tell)?
I am using the July07 distribution. The reason I installed
The renaming input selector uses # instead of $ to allow combinations with
workflow parameters.
So, in your case, #{input} should work. There are also options (basename,
upper, lower) that you can use to format the text. So, #{input | upper} would
use the input name but ensure that it was
Hi Dannon,
thanks for the fast reply.
I changed it to #{input}. But all the data names are still empty. Is there
anything I am missing?
BTW: I am on r7720
Cheers
Manuel
On 26. September 2012 4:10 PM, Dannon Baker dannonba...@me.com wrote:
The renaming input selector uses # instead of $ to
Ahh, I see what's probably going on. The matching uses the tool's actual input
name (which isn't exposed, and isn't always 'input') as opposed to the label
that you'll see in the tool form and elsewhere. Which tool is this for? If
you look at the tool xml file you should see the real input
Hi,
for some strange gff files i get the following error:
Traceback (most recent call last):
File
/media/data/web/galaxy-central/lib/galaxy/jobs/runners/local.py, line
149, in run_job
job_wrapper.finish( stdout, stderr, exit_code )
File
Thank again Dave,
For anyone who is interested, I've written a script for converting the
2bit's into fa's here:
https://bitbucket.org/gvl/gen_loc_files
Also packaged is a script to generate loc files by traversing the rsynced
folder, there is more work to be done on it though.
All
