Re: [galaxy-dev] Automatic installation of third party dependancies

2012-09-28 Thread Greg Von Kuster
Hi lance, Another best practice I should have mentioned: if you are using your TOOL_DEV_LOCAL_DIR as a source code repository for developing your tools (where you are committing tool development change sets into your hg repository in TOOL_DEV_LOCAL_DIR), you should not push the change log

Re: [galaxy-dev] Migrating a galaxy installation?

2012-09-28 Thread Nate Coraor
On Sep 6, 2012, at 9:29 AM, Fourie Joubert wrote: Hi Folks Our current galaxy version is pretty old (git updates are causing problems), and we are running very low on space in our filesystem which hosts /xxx/galaxy/database/files. I need to start with a clean galaxy install (possibly

Re: [galaxy-dev] collapse FASTA

2012-09-28 Thread Marc Logghe
Hi, If you have EMBOSS installed you should try degapseq. Galaxy emboss tools are available in the tool shed. HTH, Marc From: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu] on behalf of Deepthi Theresa [deepthither...@gmail.com]