Re: [galaxy-dev] Server stops itself

2013-01-11 Thread Nate Coraor
On Jan 11, 2013, at 4:49 AM, Rémy Dernat wrote: Hi Nate, Could you push these patch on the galaxy-dist repository ? Hi Rémy, Unfortunately, this change just missed the cutoff for today's galaxy-dist, so it will have to wait for the next one, which should be in two weeks. You are welcome

Re: [galaxy-dev] DRMAA runner weirdness

2013-01-11 Thread Liisa Koski
Hello, Can you please post the link to this patch? I do not see it in the mail thread and I too have noticed some issues with the DRMAA job running since updating to the Oct. 23rd distribution. I don't know if it is related yet but I'd like to try the patch to see. I have two local instances of

[galaxy-dev] macs error for chipseq data

2013-01-11 Thread Jennifer Jackson
Hi Kathryn, I am going to post this back to the galaxy-dev list and cc Dannon so that he or or one of the developers more experienced with troubleshooting cloud issues can help. My guess is that there is a path problem (covered in the first wiki link) but by no means is that the only

Re: [galaxy-dev] macs error for chipseq data

2013-01-11 Thread Dannon Baker
There's an issue with the MACS installation on the current cloud tools volume (which will be fixed with the next volume update coming soon). For existing instances, you can get MACS working correctly by executing the following two commands (which change the default version of macs used) after

[galaxy-dev] Galaxy January 11, 2013 Distribution News Brief

2013-01-11 Thread Jennifer Jackson
*Galaxy January 11, 2013 Distribution News Brief* http://wiki.galaxyproject.org/News/2013_01_11_DistributionNewsBrief * Complete News Brief http://wiki.galaxyproject.org/DevNewsBriefs/2013_01_11* * Highlights:* * /*GCC2013 Training Day Topic Nomination closes TODAY!*/ Read more...