[galaxy-dev] reducing overhead for quick jobs

2013-03-30 Thread Robert Baertsch
Hi All, After changing the sleep in manager.py from 5 seconds to 0.2 seconds, the job start is very snappy. I did not touch the various sleep(10)s that don't seem to be relevant. I'm testing how long it takes to sort a short bed file in galaxy. After the fix, the problem seems to be at the en

[galaxy-dev] Freesurfer Files MGZ Extension Stripped

2013-03-30 Thread Bill White
I am having trouble with Galaxy removing the .mgz file extension from Freesurfer files I upload. I understand .gz gets stripped for gzipped files, but the pattern matching algorithm for detecting the extension must be treating the '.' as 'any character' rather than a literal '.' character. I am lef