On Wed, Jun 12, 2013 at 3:06 PM, Berner, Thomas
thomas.ber...@jki.bund.de wrote:
Hi guys,
another error appeared after we installed NCBI BLAST + to our local Galaxy
instance and wanted to test it.
After uploading some testdata to our history we tried to run blastn on it
and got the
On Wed, Jun 12, 2013 at 11:45 AM, Berner, Thomas
thomas.ber...@jki.bund.de wrote:
Hi guys,
We recently installed NCBI BLAST + to our local Galaxy instance and now we
need to provide the possibility to filter/mask … by taxon id (taxid) using
the command line option (-window_masker_taxid) of
Il giorno gio, 13/06/2013 alle 18.06 +0100, Peter Cock ha scritto:
On Thu, Jun 13, 2013 at 6:02 PM, Nicola Soranzo sora...@crs4.it wrote:
There are two issues here, one that we would like to be able to
handle multi-threading better via Galaxy configuration on a
per-tool level, but for
All,
Let me try this again. My previous attempts have been bouncing.
I've succeeded in getting in getting the display at UCSC main link to
display, but I'm getting a strange error when I'm redirected to the page. I
can't cut-and-paste the error, so hopefully the attached screen shot wont
Resending as the mailing list was down:
On Thu, Jun 13, 2013 at 6:02 PM, Nicola Soranzo sora...@crs4.it wrote:
There are two issues here, one that we would like to be able to
handle multi-threading better via Galaxy configuration on a
per-tool level, but for now it must often be hard coded or
Forwarding back to the list which had been offline and
seemed to be missing these two emails...
-- Forwarded message --
From: Greg Von Kuster g...@bx.psu.edu
Date: Thu, Jun 13, 2013 at 6:34 PM
Subject: Re: Portable tool identifiers in workflows
To: Peter Cock
On Thu, Jun 13, 2013 at 6:34 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Peter,
Unfortunately, workflows are currently not very compatible with
the tool shed - there is a Trello card that details the issues here:
https://trello.com/card/workflow-issues/506338ce32ae458f6d15e4b3/692
(Apologies is anyone who go this twice, the Galaxy mailing list
has been offline.)
Hello all,
As many of you know I wrote the original BLAST+ wrappers for
Galaxy, which are now on the Tool Shed here:
* http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus
*
Hi,
On 12/06/13 05:50 PM, Jennifer Jackson wrote:
Hi Sébastien,
This all looks fine, except for the part about including this in the
distribution. As James stated, we are moving to a model where eventually
all tools will be sourced from the Tool Shed. That is where you should
create your
Hi again,
On Jun 13, 2013, at 1:23 PM, Sébastien Boisvert
sebastien.boisver...@ulaval.ca wrote:
Hi,
On 12/06/13 05:50 PM, Jennifer Jackson wrote:
Hi Sébastien,
This all looks fine, except for the part about including this in the
distribution. As James stated, we are moving to a model
Hello dev-team,
Usually when I want to move a Galaxy Published Page between instances I
follows these steps:
(a) moving workflows and dataset from instance_1 to instance_2
(b) run the workflow at instance_2
(c) create the page at instance_2
So my question is - Can I move/share published pages
Hi Vipin,
There isn't currently a page export/import mechanism and the steps outlined
above seem reasonable. Of course, contributions are appreciated should
anyone wish to undertake this project.
-Dannon
On Thu, Jun 13, 2013 at 5:27 PM, Vipin TS vipin...@gmail.com wrote:
Hello dev-team,
Hi,
since John patch is applied I created a pull request for that feature:
https://bitbucket.org/galaxy/galaxy-central/pull-request/179/implement-the-ability-to-change-the-tool/diff
Comments welcome!
Björn
Hi,
thanks to the awesome work from John Chilton in pull request #160 [1] I
hacked
Hi Peter,
On Jun 13, 2013, at 4:14 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Thu, Jun 13, 2013 at 6:34 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Peter,
Unfortunately, workflows are currently not very compatible with
the tool shed - there is a Trello card that details the
Hello,
Several people in our lab would like to download all of their histories from
their respective Galaxy accounts. We tried to download them using the following
steps:
Select Export to File
Copy the provided link and paste into WGet.exe program as follows:
wget.exe --no-check-certificate
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