Hello, I launched a new Cloudman instance last week to analyse my RNA-seq data. I uploaded and cleaned my data, but could not run Tophat and Cufflinks due to the "Broken symbolic links" problem (https://bitbucket.org/galaxy/cloudman/issue/6/tool-default-symbolic-links-to-mnt). I have completed running Tophat2 on the public server. Now, I like to install edgeR (http://toolshed.g2.bx.psu.edu/repository?repository_id=0c447003da85ae19) from the toolshed for further analyses. I cannot find a way to install that tool in my cloudman instance. My background is in psychiatry and I do not have any knowledge of Linux commands. Is there a way to install a tool (edgeR) from the toolshed without using command lines? Any help is greatly appreciated. Thank you.
Best wishes, Anto Anto Rajkumar, MD, DNB, MRCPsych, PhD fellow, Department of Biomedicine, Aarhus university, 8000 C, Aarhus, Denmark. Ph (office) : 045- 87167292 E-mail: a...@hum-gen.au.dk
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