Re: [galaxy-dev] Why does my trackster complain about not being able to display BED files?

2013-08-22 Thread Hans-Rudolf Hotz
Hi Thon double check your datatypes_conf.xml (which was not touched/changed during the update process, since it is listed in the .hgignore file, I guess) with the new datatypes_conf.xml.sample file for any changes regarding converters for bed files Regards, Hans-Rudolf On 08/22/2013

Re: [galaxy-dev] Galaxy Release Cycle Length

2013-08-22 Thread Leon Mei
Hi Dave, I am one of the requesters on a less frequent release. Certainly this does not need to replace the current release scheme in the development branch: Galaxy system users who prefer keeping their code up to date can still go there. It is just nice to have a separate branch with a less

Re: [galaxy-dev] developing a tool which could encapsulate any tool

2013-08-22 Thread Peter Cock
On Thu, Aug 22, 2013 at 4:14 PM, Ketan Maheshwari ketancmaheshw...@gmail.com wrote: Hi All, I am trying to develop a generic Galaxy tool which could encapsulate any other Galaxy tool and run it. The motivation behind this development is to enable running ordinary Galaxy tools in parallel with

Re: [galaxy-dev] Passing user_email to a data source

2013-08-22 Thread Anthony Bretaudeau
Hi, I have written a patch for this. The pull request is there : https://bitbucket.org/galaxy/galaxy-central/pull-request/206/give-access-to-__user_email__-and It works fine on my galaxy instance. Cheers Anthony On 21/08/2013 08:51, Hans-Rudolf Hotz wrote: Hi Anthony I doubt it will solve your