[galaxy-dev] Grouping of tools inside of toolbox does not work

2014-08-28 Thread Björn Grüning
Hi, I have multiple version of the ncbi-blast+ wrapper installed. But they appear twice or a few of them even tripled in the toolbox. Expected behavior is only one tool in the toolbox and a select box inside of the tool. I have prepared a docker galaxy-blast container as test case.

Re: [galaxy-dev] testing the visualization plugins

2014-08-28 Thread Hans-Rudolf Hotz
Hi Carl What was the datatype (listed as 'format') of the dataset you tested with here?: However, if I hoover over the bar-plot icon, Visualize in Trackster pops up (instead of just Visualize) any data type, eg wig, tabular, bed, etc I currently have: 'result_type=datatypedata.Data'

Re: [galaxy-dev] testing the visualization plugins

2014-08-28 Thread Carl Eberhard
Ok - thanks! That is strange: the server seems to be configured properly for all the new plugins but the client side believes only trackster is available. Let's try two things: *First*, let's clear the browser cache to rule out that annoyance: - In Chrome, I've had good luck with these

Re: [galaxy-dev] testing the visualization plugins

2014-08-28 Thread Hans-Rudolf Hotz
Hi Carl Thanks for your help - unfortunately no success so far Let's try two things: *First*, let's clear the browser cache to rule out that annoyance: This didn't change anything. I have also tried different computers and different browsers *Second*, let's see what the server ends

Re: [galaxy-dev] testing the visualization plugins

2014-08-28 Thread Carl Eberhard
Ok. Very strange. I'm unable to reproduce this with galaxy-dist 57d1b77 (stable). Can you apply the attached patch, load a history with a simple bed file (say: test-data/1.bed - or any bed file), and reply with what the logs say? You can safely revert that change after we're done. On Thu, Aug

Re: [galaxy-dev] Grouping of tools inside of toolbox does not work

2014-08-28 Thread John Chilton
Thanks for the bug report. I would say that sounds like it should be easy to fix - but the last time there was a tool grouping bug - it took multiple of us hours (days in some cases I think) of investigation to figure it out - so I have created a Trello card to track progress on this