[galaxy-dev] Error with large BAM files?

2012-02-10 Thread Brian Luerman
? Any help is appreciated, thanks! Brian Luerman Intrepid Bioinformatics (502) 212-2699 http://intrepidbio.com/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other

[galaxy-dev] Custom Get Data page doesn't recognize completion of large file downloads

2012-03-28 Thread Brian Luerman
I have a custom module/page created to get data from some SOAP-based web services. I haven't determined the threshold yet, but for small BAM files, Galaxy behaves just fine. However, when I get large BAM files (I've had the same results with 10gig and 40gig files), Galaxy doesn't recognize

[galaxy-dev] How to get a local file into the dataset window/browser?

2012-04-17 Thread Brian Luerman
I have BAM files sitting in database/files that I want to automatically (ie: not through the Upload File tool) import/display via a tool/script/process other in the dataset pane (sorry, not sure of proper terminology, but the History/right side pane). How do I locate these files and