Hi Galaxy-dev, A small point of clarification to follow up on this exchange: http://gmod.827538.n3.nabble.com/GATK-v2-x-td4024851.html
In this exchange, JT mentions "those [tools] which remain under the open source license (basically, GATK 1.6)". I assume he means GATK Lite, which includes the core GATK architecture, engine and all tools that were present in v1.6, all of which indeed remain completely open-source under the new license. What I would like to clarify is that while GATK Lite is the continuation of the 1.6 development branch, it is more appropriately referred to as version number "2.x (lite)". I realize there may be some confusion about the version numbering and what exactly is or isn't open-source now, so if you have any questions please feel free to email me directly at vdauw...@broadinstitute.org or post your question in our support forum at http://gatkforums.broadinstitute.org/ Regards, Geraldine ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
