[galaxy-dev] export to local file system

2011-03-16 Thread James Lindsay
Hello, I was wondering if there was a way to export a dataset to the file system? Basically I think it would be advantageous if someone could copy a dataset to an "export" folder, with appropriate naming and file extensions, they could then FTP this data away or work with it locally? Thanks,

[galaxy-dev] python job manager

2011-03-16 Thread James Lindsay
Hi, I run galaxy on a large SMP university machine. The machine is used by some folks for command line work, and others via galaxy. I was wondering if anyone had integrated into galaxy a job manager that monitors CPU load averages, and only runs new jobs when cpu resources are available? Than

[galaxy-dev] script to download genomes

2011-04-14 Thread James Lindsay
Hello, I'm working on a simple python script that auto-magically creates all indexes, and pre-processing necessary to add a genome to galaxy. I was wondering if anyone had a script to download all the genomes that are presented to you in the default genome drop down box? Also I'm not to confi