[galaxy-dev] Galaxy + ProFTPd - proper configuration / uploaded files not accessible in Galaxy

2013-04-08 Thread Jan Hapala
Hi, I am new to Galaxy. I have managed to set up my Galaxy server with PostgreSQL and ProFTPd. I only do not know how to configure the system properly in order to get uploaded files into Galaxy. Problems: 1. I cannot see the files uploaded through ProFTPd from Galaxy. 2. I cannot upload any

Re: [galaxy-dev] Galaxy + ProFTPd - proper configuration / uploaded files not accessible in Galaxy

2013-04-08 Thread Jan Hapala
Hi Björn, yes, this was the problem - I had wrong GID there. Now it works! Thanks! Jan 2013/4/8 Björn Grüning bjoern.gruen...@pharmazie.uni-freiburg.de Hi Jan, you have that line in your config file, right? SQLNamedQuery LookupGalaxyUser SELECT

[galaxy-dev] pbkdf2 encryption - disabling does not work

2013-09-25 Thread Jan Hapala
Hi, I need to run Galaxy with ProFTPd, therefore I need to disable the PBKDF2 encryption of the passwords (as stated here http://dev.list.galaxyproject.org/disable-PBKDF2-revert-to-SHA1-td4661274.html ). However, when I do add this line: use_pbkdf2 = false to the universe_wsgi.ini, restart

Re: [galaxy-dev] pbkdf2 encryption - disabling does not work

2013-09-26 Thread Jan Hapala
Ahoj Honzo, Python is case-sensitive. Use 'use_pbkdf2 = False' and make sure you put it under the '[app:main]' section in the config file. Enjoy Galaxy! best Martin Cech On Wed, Sep 25, 2013 at 9:15 AM, Jan Hapala j...@hapala.cz wrote: Hi, I need to run Galaxy with ProFTPd, therefore

Re: [galaxy-dev] pbkdf2 encryption - disabling does not work

2013-09-26 Thread Jan Hapala
. What version are you using now? Martin On Thu, Sep 26, 2013 at 4:02 AM, Jan Hapala j...@hapala.cz wrote: Ahoj Martine, thanks for your response. That was a pretty stupid mistake, hard to notice even though I program in Python. However, this has not solved my problem, I get the same error. (I

[galaxy-dev] rename output dataset in workflow - input dataset variable

2014-11-12 Thread Jan Hapala
Hello, I want to rename ouput datasets in a workflow in such a way that the name contains the name of the input dataset. I could not find instructions in the manual (and this info is missing in the Workflow editor - would be really helpful there!). I tried #{input}, e.g. stats on: #{input} (with