Hi, Thanks for providing the indexes via rsync:: http://wiki.g2.bx.psu.edu/Admin/Data%20Integration We've, noticed that despite soft links pointing to it, there are no .fa files for example in hg19/seq/ However there are 2bit files. Would you guys recommend we convert them from 2bit to fasta?
to fasta shouldn't cause any problems. --Dave B. On 9/25/12 03:20:14.000, Kevin Y wrote: Hi, Thanks for providing the indexes via rsync:: http://wiki.g2.bx.psu.edu/**Admin/Data%20Integrationhttp://wiki.g2.bx.psu.edu/Admin/Data%20Integration We've, noticed that despite soft links pointing
the (approximately) four times larger files when 2bit is available. --Dave B. On 9/25/12 20:55:31.000, Kevin Y wrote: Thanks Dave, A question before we go ahead, why are they missing in the first place? Does the main galaxy not actually need them? are the tools moving away from fa? Cheers
Hi, We are trying to debug our local instance of Gencode Partition (version 1.0.0) We seem to missing this configuation file encode_feature_partitions/partition_list.txt The link given in the tool is behind a login wall and I can't get through:
Hi, I'm looking for documentation on what I can do inside the command tag for tools. I know of things like #if str( $input ) == 'yes': Do stuff #end if can I do for loops? What should I google? I can't find anything on the wiki. Thanks, Kevin.
Hi dev list, What is the simplest xml I can put into a tool_dependencies.xml for it to create a dummy env.sh in tool-dependency/tool/version/ /awef234243/env.sh And will this be sourced each time. Or does the dependency need to be some sort of successfully install status for it to be
in the installed repository is executed in the Galaxy instance in case this is what you're looking for. http://wiki.galaxyproject.org/ToolShedToolFeatures#Finding_dependencies_included_in_an_installed_repository_at_tool_execution_time Greg Von Kuster On Nov 12, 2012, at 1:51 AM, Kevin Y