= command.get(interpreter, None)
AttributeError: 'NoneType' object has no attribute 'get'
...
--
Hailiang (Leon) Mei
Netherlands Bioinformatics Center (http://www.nbic.nl/)
Skype: leon_meiMobile: +31 6 41709231
___
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...
Migration script to add 'info' column to the task table.
done
==
Thanks,
Leon
On Mon, Dec 5, 2011 at 9:11 PM, Nate Coraor n...@bx.psu.edu wrote:
On Dec 5, 2011, at 3:02 PM, Leon Mei wrote:
Dear all,
Today I upgraded our NBIC server from an older release (fetched on July
5th, 2011) to the latest
is unsubscriptable
my_IP - - [06/Jan/2012:17:46:53 +0200] GET
/galaxy/api/workflows/e037fdb493429c2a?key=my_key HTTP/1.1 500 - -
Python-urllib/2.6
*/
Any suggestion on how to solve this problem?
Thanks,
Leon
--
Hailiang (Leon) Mei
Netherlands Bioinformatics Center
BioAssist NGS Taskforce
- https://wiki.nbic.nl
? Is there perhaps a tool with no
inputs in use?
Thanks!
-Dannon
On Jan 6, 2012, at 11:59 AM, Leon Mei wrote:
Hi,
I received an error when I was trying to view the details of existing
workflows through API.
I can see 4 workflows owned by myself successfully. But viewing the
details of any
,
Leon
--
Hailiang (Leon) Mei
Netherlands Bioinformatics Center
BioAssist NGS Taskforce
- https://wiki.nbic.nl/index.php/Next_Generation_Sequencing
Skype: leon_meiMobile: +31 6 41709231
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Hi guys,
Is that possible to delete datasets in a shared data library via API? Of
course when the modify permission is granted.
We see delete.py in the API script folder but can't figure out how to get
it work.
Thanks!
Leon
--
Hailiang (Leon) Mei
Netherlands Bioinformatics Center
BioAssist
Dear all,
Haven't heard anything back yet. So give it another try.
Anyone knows if deleting dataset is supported by API? Or it will be a
to-be-added feature?
Thanks for any hint!
Cheers,
Leon
On Thu, Apr 12, 2012 at 10:32 PM, Leon Mei hailiang@nbic.nl wrote:
Hi guys,
Is that possible
experience on this.
Thanks a lot,
Leon
--
Hailiang (Leon) Mei
Netherlands Bioinformatics Center
BioAssist NGS Taskforce
- http://ngs.nbic.nl
Skype: leon_meiMobile: +31 6 41709231
___
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.
Cheers,
Leon
On Tue, Sep 4, 2012 at 10:54 PM, Leon Mei hailiang@nbic.nl wrote:
Dear list members,
Did anyone migrate the Galaxy database from MySQL to Postgres lately?
Any verified script available? Simple solution by adding a postgres
flag in mysqldump
(http://dev.list.galaxyproject.org
a Galaxy update, is there any other way to lock the job
queue in Galaxy?
Thanks,
Leon
--
Hailiang (Leon) Mei
Netherlands Bioinformatics Center
BioAssist NGS Taskforce
- http://ngs.nbic.nlhttps://wiki.nbic.nl/index.php/Next_Generation_Sequencing
Skype: leon_meiMobile: +31 6 41709231
) is not present in table
workflow_step.
==
It seems our postgres DB got corrupted? Any suggestion on a fix?
Thanks a lot!
Leon
--
Hailiang (Leon) Mei
Netherlands Bioinformatics Center
BioAssist NGS Taskforce
- http://ngs.nbic.nlhttps://wiki.nbic.nl/index.php/Next_Generation_Sequencing
Skype: leon_mei
explanations?
How exactly did you perform your database backup and attempted recreation?
-Dannon
On Mon, Jun 17, 2013 at 5:12 PM, Leon Mei hailiang@nbic.nl wrote:
Dear list,
Yesterday, I noticed that the user quota setting on our Galaxy had a
problem - the list of user email address
]: checking password using
SQLAuthType 'pbkdf2'
2013-07-26 13:15:06,993 mod_sql/4.3[31761]: 'pbkdf2' SQLAuthType handler
reports failure
What are we missing?
Thanks!
Rob and Leon
--
Hailiang (Leon) Mei
Netherlands Bioinformatics Center
BioAssist NGS Taskforce
- http://ngs.nbic.nlhttps://wiki.nbic.nl
mod_sql/4.3[32384]: cmd_auth
The old user account generated before our code update still works.
I wonder how it is configured at the Galaxy main server?
Thanks,
Leon
On Thu, Aug 8, 2013 at 8:45 PM, Nate Coraor n...@bx.psu.edu wrote:
On Jul 26, 2013, at 3:51 PM, Leon Mei wrote:
Dear galaxy
is currently
configured.
--
James Taylor, Assistant Professor, Biology/CS, Emory University
On Fri, Aug 9, 2013 at 10:01 AM, Nate Coraor n...@bx.psu.edu wrote:
On Aug 9, 2013, at 2:38 AM, Leon Mei wrote:
Hi Nate,
Thanks for the suggestion! Unfortunately, it still failed :(
I got
are interested in a discussion.
Thanks,
Dave C
--
Hailiang (Leon) Mei
Netherlands Bioinformatics Center
BioAssist NGS Taskforce
- http://ngs.nbic.nlhttps://wiki.nbic.nl/index.php/Next_Generation_Sequencing
Skype: leon_meiMobile: +31 6 41709231
==
Any hint on which step is wrong or missing is highly appreciate!
Thanks,
Leon
--
Hailiang (Leon) Mei
Netherlands Bioinformatics Center
BioAssist NGS Taskforce
- http://ngs.nbic.nl
Skype: leon_meiMobile: +31 6 41709231
___
Please
that although you are only indexing (for extraction) for the
specified listed species, the alignments will contain all of the species
present in the original file (you list 46way multiZ as the source).
Thanks for using Galaxy,
Dan
On Sep 10, 2013, at 6:44 PM, Leon Mei wrote:
Dear
the tools included with Galaxy, or
alternatively the maf_thread_for_species.py script in bx-python.
Thanks for using Galaxy,
Dan
--
Hailiang (Leon) Mei
Netherlands Bioinformatics Center
BioAssist NGS Taskforce
- http://ngs.nbic.nl
Skype: leon_meiMobile: +31 6 41709231
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